SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209527

Length: 459 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene209527
AATGGCTTCGTTCTCACTCTTCCTGCCCTACTTGCAGGCATTATCTTCTTGATAGTGAAAAAGTGGCAGACCGAATTCAGCCTAGCAAATCAGTTGCCCGGCATCAGCAAATTAATCAACCGAGAGCTTCACACGAATCTAGAGAAATCATCGACCTAGAGCATGGGGTTAAGCGATAGAAAGGTGCGCCAGATTAAGTATATGGACGGAAACGGAGTATTCTTGAAATTCTTTGAAGACAGCACTGTATCCGGGTGAAAGCTGTGATCATGACTTCTTGGTGTGAGCTCAATATAAGGAAAGTAAGAGAAAAACGTATAGAACTCAGAGCAGACCTAGGAGACTATCGCAGTATACTATTCACGCAGAGGACAGCACTGTTACATACAGTTTTAAAGTGGGTACCAAAATTGCAAGATTTATGTAATGATGATCAAAATATTCTTGAGATTCATGTAA

Ace file of the UniGene sp_v3.0_unigene209527 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	3.0e-12	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPQ1

Fln msg: your sequence is shorter than subject: 59 - 186

Fln protein: WLRSHSSCPTCRHYLLDSEKVADRIQPSKSVARHQQINQPRASHESREIIDLEHGVKR*

Protein Length: 60

Fln nts: AATGGCTTCGTTCTCACTCTTCCTGCCCTACTTGCAGGCATTATCTTCTTGATAGTGAAAAAGTGGCAGACCGAATTCAGCCTAGCAAATCAGTTGCCCGGCATCAGCAAATTAATCAACCGAGAGCTTCACACGAATCTAGAGAAATCATCGACCTAGAGCATGGGGTTAAGCGATAG___AAAGGTGCGCCAGATTAAGTATATGGACGGAAACGGAGTATTCTTGAAATTCTTTGAAGACAGCACTGTATCCGGGTGAAAGCTGTGATCATGACTTCTTGGTGTGAGCTCAATATAAGGAAAGTAAGAGAAAAACGTATAGAACTCAGAGCAGACCTAGGAGACTATCGCAGTATACTATTCACGCAGAGGACAGCACTGTTACATACAGTTTTAAAGTGGGTACCAAAATTGCAAGATTTATGTAATGATGATCAAAATATTCTTGAGATTCATGTAA

Fln Alignment:

Root_euler_11518___WLRSHSSCPTCRHYLLDS--EKVADRIQPSKSVARHQQINQPRASHESREIIDLEHG
B8LPQ1________________WLLSHSSCPTCRHYLLDPGCKRVANHIQPRKSNAREVQIHQPGPAQESGEIIDLECG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain