SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209521

Length: 223 nt

UniGene Fasta

>sp_v3.0_unigene209521
GAGATCGAGGGTTTCAAAGCTCCGGCCTACACAAAGCGGTGTATCTCTTATCATTGTTTGGAGATCGAGGGTGCAGCCAGGCAGGAGCGGCTGGGGCGTTGAAGATACGAAGTGAGAAGTCTTGAATTCCTGTAGCCATGGCTGAACAGACTGAGAGAGCTTTTCTGAAGCAACCAAAAGTCTTTCTCAGTTCTAAGACGTCTGGGAAGGGGAAACGACCTGG

Ace file of the UniGene sp_v3.0_unigene209521

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH	-	-	2.0e-06	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	40S ribosomal protein S11	-	-	8.625e-11	-

Source	Gene names
Sma3	At3g48930; At4g30800; At5g23740; EMB1080; F6I18.290; MRO11.22; OJ1112_E08.122; OJ1112_E08.123; OJ1773_H01.103; OJ1773_H01.104; OSJNBa0070C17.19; OSJNBa0070C17.20; Os04g0613500; Os04g0613600; Os07g0565000; Os07g0565100; OsI_17369; OsI_17370; OsI_17372; OsJ

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S17	IPR000266	-	-
Sma3	Protein of unknown function DUF707	IPR007877	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G23740.1	RPS11-BETA ribosomal protein S11-beta chr5:8008251-8009330 REVERSE LENGTH=159	6.0e-11	92%
RefSeq	Arabidopsis thaliana	NP_197763.1	40S ribosomal protein S11-3 [Arabidopsis thaliana]	8.0e-11	92%
RefSeq	Populus trichocarpa	XP_002325170.1	predicted protein [Populus trichocarpa]	7.0e-11	92%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN19

Fln msg: Distance to subject end: 131 aas, your sequence is shorter than subject: 28 - 160

Fln protein: MAEQTERAFLKQPKVFLSSKTSGKGKRP

Protein Length: 29

Fln nts: GAGATCGAGGGTTTCAAAGCTCCGGCCTACACAAAGCGGTGTATCTCTTATCATTGTTTGGAGATCGAGGGTGCAGCCAGGCAGGAGCGGCTGGGGCGTTGAAGATACGAAGTGAGAAGTCTTGAATTCCTGTAGCC_-_ATGGCTGAACAGACTGAGAGAGCTTTTCTGAAGCAACCAAAAGTCTTTCTCAGTTCTAAGACGTCTGGGAAGGGGAAACGACCTGG

Fln Alignment:

Root_euler_13031___MAEQTERAFLKQPKVFLSSKTSGKGKRP
A9NN19________________MAEQTERAFLKQPKVFLSSKKSGKGKRP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain