SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209465

Length: 561 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene209465
TTTTTAAGCTGTCATATTTAGTGTCAACATTTTTTTGATCCTCCAAGCATCCATAATGATCATGGATTCTTAAAAAAACCTGCAAAACATTTTTTTGATCTACAAAGCATCCATAATGTTCGTGGATTCTTAACCAAACCTGCAGACCACCAAATGTTGGAAGGTGCTAGGTAGTAAACGAGAGTGGATGATTAGGGGTATTTAGTGGAGTGGTCGCTGAAATCTCAAACACTGCTTTAAAAAAACAGGTGGATGCGCCAAAGTTTTGGGTTCCAATTATGTGTACGGGATACTCTAGCTTGTTGGGTCAATGAAAAACCAGCTATCCAAATGGAGATCCAGGGTGTTTTCATCAATCTGGTCTTGGTGGAACCCTTTGGTTTGACTCTCATTGAGGAAGCTGCACATGGATTACCTATGGTTGCCACAAAGAATGCAGGACTTGTAGACATTCAATGGGTATATTGAAAATTCTTCTATTTAATATAAAAGTTTGAATGGATATTACATGTGATTGATCACTCAAATTGGTTTATTGTTGTGTAGATGTTGAATAATGGT

Ace file of the UniGene sp_v3.0_unigene209465 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sucrose phosphate synthase n=1 Tax=Selaginella moellendorffii RepID=D8QZA5_SELML	-	-	2.0e-09	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Sucrose-phosphate synthase	-	-	4.281e-31	-

Source	ECs	Term	Type	e value	Identity
Sma3	Sucrose-phosphate synthase.	EC:2.4.1.14	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	AT4g10120; At1g04920; At4g10120; At5g11110; At5g20280; F13M7.9; F28M11.40; GSVIVT00006423001; GSVIVT00032026001; GSVIVT00032684001; GSVIVT00038291001; GSVIVT00038825001; KSPS-1; LOC_Os11g12810; LpSPS; OJ1115_A07.105; OSJNBa0096K16.11; Os08g0301500; Os11g0

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sucrose-phosphate synthase activity	GO:0046524	Molecular Function	-
Sma3	sucrose metabolic process	GO:0005985	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Sucrose-phosphate synthase	IPR006380	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3		IPR012287	-	-
Sma3	Sucrose phosphate synthase, plant	IPR012819	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G04920.1	ATSPS3F, SPS3F sucrose phosphate synthase 3F chr1:1391674-1395756 REVERSE LENGTH=1062	4.0e-12	84%
RefSeq	Arabidopsis thaliana	NP_171984.2	sucrose-phosphate synthase [Arabidopsis thaliana]	5.0e-12	84%
RefSeq	Populus trichocarpa	XP_002298684.1	predicted protein [Populus trichocarpa]	5.0e-12	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLM0

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 429 aas, your sequence is shorter than subject: 156 - 713

Fln protein: FLSCHI*CQHFFDPPSIHNDHGFLKKPAKHFFDLQSIHNVRGFLTKPADHQMLEGAR**TRVDD*GYLVEWSLKSQTLL*KNRWMRQSFGFQLCVRDTLACWVNEKPAIQMEIQGVFINLVLVEPFGLTLIEEAAHGLPMVATKNAGLVDIQWVY*

Protein Length: 157

Fln nts: TTTTTAAGCTGTCATATTTAGTGTCAACATTTTTTTGATCCTCCAAGCATCCATAATGATCATGGATTCTTAAAAAAACCTGCAAAACATTTTTTTGATCTACAAAGCATCCATAATGTTCGTGGATTCTTAACCAAACCTGCAGACCACCAAATGTTGGAAGGTGCTAGGTAGTAAACGAGAGTGGATGATTAGGGGTATTTAGTGGAGTGGTCGCTGAAATCTCAAACACTGCTTTAAAAAAACAGGTGGATGCGCCAAAGTTTTGGGTTCCAATTATGTGTACGGGATACTCTAGCTTGTTGGGTCAATGAAAAACCAGCTATCCAAATGGAGATCCAGGGTGTTTTCATCAATCTGGTCTTGGTGGAACCCTTTGGTTTGACTCTCATTGAGGAAGCTGCACATGGATTACCTATGGTTGCCACAAAGAATGCAGGACTTGTAGACATTCAATGGGTATATTGAAAATTCTTCTATTTAATATAAAAGTTTGAATGGATATTACATGTGATTGATCACTCAAATTGGTTTATTGTTGTGTAGATGTTGAATAATGGT

Fln Alignment:

Root_euler_9678___QGVFINLVLVEPFGLTLIEEAAHGLPMVATKNAGLVDI
B8LLM0________________KGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain