SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209394

Length: 168 nt

UniGene Fasta

>sp_v3.0_unigene209394
ATTGAAGGGGTGATGAAGGAGGTGGACTCCAACAAAGACGGATTCATCAACTTCGACGAGTTGGTGGCCGCCAGTCTCATGCGAAATTCCGCTTCCGCTGTGCAATGTGCCGCTCTGCCCGGCCGCTTGGAGCTGGAGAACGTGTTCCGCAAGTTCGACACCAACGGC

Ace file of the UniGene sp_v3.0_unigene209394

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium binding protein n=1 Tax=Pinus taeda RepID=O22429_PINTA	-	-	1.0e-20	84%
FL-Next	tr=Calcium binding protein; Pinus taeda (Loblolly pine).	-	-	0.0	84%

Source	Gene names
Sma3	lp8;

Source	GOs	Term	Type	Identity
Sma3	bacterial-type flagellum	GO:0009288	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ciliary or flagellar motility	GO:0001539	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: O22429

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 56 - 166

Fln protein: IEGVMKEVDSNKDGFINFDELVAASLMRNSASAVQCAALPGRLELENVFRKFDTNG

Protein Length: 57

Fln nts: ATTGAAGGGGTGATGAAGGAGGTGGACTCCAACAAAGACGGATTCATCAACTTCGACGAGTTGGTGGCCGCCAGTCTCATGCGAAATTCCGCTTCCGCTGTGCAATGTGCCGCTCTGCCCGGCCGCTTGGAGCTGGAGAACGTGTTCCGCAAGTTCGACACCAACGGC

Fln Alignment:

Root_euler_18789___IEGVMKEVDSNKDGFINFDELV--------AASLMRNSASAVQCAALPGRLELENVFRKFDTNG
O22429________________IEGVMKEVDSNKDGFINFDELVEANSKNLNAASLMRNSASAVQCATLPGRLELEDVFRKFDTNG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain