SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209393

Length: 240 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene209393
GTTATATGTTATTCTTATTACTAAATTTTAGCGTTCTTATCCTCTTGCAGGGTTGTGATGGGTCTATCCTTCTGGACGATACCTCGAGTTTTACAGGTGAAAAGACAGCAGTTCCCAATAACAATTCCGCCAGAGGTTTTGGGGTCGTTGATAGAATAAAGAAGAAGCTGGAGCAGGCTTGCAGCGGTGTCGTATCATGTGCTGACATTTTGGCAATTGCTGCTCGCGATTCTGTTGTAA

Ace file of the UniGene sp_v3.0_unigene209393 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxidase (Fragment) n=1 Tax=Litchi chinensis RepID=Q206Y8_LITCN	-	-	3.0e-23	84%
FL-Next	tr=Properoxidase; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	84%
Sma3	Peroxidase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	At1g44970; At1g68850; At4g16270; At5g05340; At5g06720; At5g58390; At5g58390/MCK7_26; At5g58400; F14K14.4; F27F5.6; FCAALL.329; FLXPER1; GSVIVT00014550001; GSVIVT00015157001; GSVIVT00015158001; GSVIVT00015159001; GSVIVT00015160001; GSVIVT00018769001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	rhythmic process	GO:0048511	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Alpha-N-acetylglucosaminidase	IPR007781	-	-
Sma3	GCN5-like 1	IPR009395	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G05340.1	Peroxidase superfamily protein chr5:1579142-1580819 REVERSE LENGTH=324	1.0e-28	80%
RefSeq	Arabidopsis thaliana	NP_196153.1	peroxidase 52 [Arabidopsis thaliana]	2.0e-28	80%
RefSeq	Populus trichocarpa	XP_002328991.1	predicted protein [Populus trichocarpa]	5.0e-28	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q0JW35

Fln msg: Distance to subject end: 194 aas, your sequence is shorter than subject: 79 - 341

Fln protein: YMLFLLLNFSVLILLQGCDGSILLDDTSSFTGEKTAVPNNNSARGFGVVDRIKKKLEQACSGVVSCADILAIAARDSVV

Protein Length: 80

Fln nts: GTTATATGTTATTCTTATTACTAAATTTTAGCGTTCTTATCCTCTTGCAGGGTTGTGATGGGTCTATCCTTCTGGACGATACCTCGAGTTTTACAGGTGAAAAGACAGCAGTTCCCAATAACAATTCCGCCAGAGGTTTTGGGGTCGTTGATAGAATAAAGAAGAAGCTGGAGCAGGCTTGCAGCGGTGTCGTATCATGTGCTGACATTTTGGCAATTGCTGCTCGCGATTCTGTTGTAA

Fln Alignment:

Root_euler_16813___QGCDGSILLDDTSSFTGEKTAVPNNNSARGFGVVDRIKKKLEQACSGVVSCADILAIAARDSV
Q0JW35________________KGCDGSILLDDTSSFTGEKTANPNRNSVRGFGVVDQIKSELEKACPGVVSCADILAVAARDSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain