SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209371

Length: 451 nt

UniGene Fasta

>sp_v3.0_unigene209371
CTCAGACAAGGAACTGAACACAAAGGACCAAGCCCGCGGCTACCAAAATTTGGAGAGATAACTCTACAAGTGGAGGAGACTATCGATTCAAAAACTATGTCCTCCTTATCATCACGGATGGAGTCATTACTGATCTTCAAGAAACAAAGGATGCCATCATCAGGGCTTCAGATCTGCCTCTTTCAATTCTTATTGTGGGTGTTGGTGGGGCAGATTTTAAAGAAATGGAGATCCTGGATGCAGATAAAGGCGAACCATTAGAAAGTTCCACTGGACGAGTCGCGACACGTGATATAGTGCAATTTGTTCCCCTGCGGAATTTGCCGAGTGAAGAAACAATTGCACAATCGCTGTTAGCTGAACTGCCCATGCAATTTTTGAGTTATATGAAGAGCAGAAATATAGAACCTGTTGTGCTAGAGAGTTGATTCACCGAAATGTAGTTTTGACA

Ace file of the UniGene sp_v3.0_unigene209371

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	calcium-dependent phospholipid-binding copine-like protein [Arabidopsis thaliana] ref\|NP_974977.1\| calcium-dependent phospholipid-binding copine-like protein [Arabidopsis thaliana] sp\|Q941L3.2\|BON1_ARATH RecName: Full=Protein BONZAI 1; AltName: Full=COPIN	-	-	2.0e-38	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Copine-like protein	-	-	2.347e-08	-

Source	Gene names
Sma3	At5g07300; At5g61900; BON1; BON3; CHLREDRAFT_143968; CHLREDRAFT_143969; F7G19.25; GSVIVT00006116001; GSVIVT00006119001; GSVIVT00006122001; GSVIVT00006125001; GSVIVT00008908001; GSVIVT00018042001; GSVIVT00031764001; GSVIVT00038404001; K22G18.2; MtrDRAFT_AC

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	calcium-dependent phospholipid binding	GO:0005544	Molecular Function	-
Sma3	response to temperature stimulus	GO:0009266	Biological Process	-
Sma3	response to humidity	GO:0009270	Biological Process	-
Sma3	positive regulation of cell size	GO:0045793	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	Copine	IPR010734	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G61900.1	BON1, CPN1, BON Calcium-dependent phospholipid-binding Copine family protein chr5:24855908-24859150 REVERSE LENGTH=578	76%
RefSeq	Arabidopsis thaliana	NP_974977.1	calcium-dependent phospholipid-binding copine-like protein [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002318175.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLG3

Fln msg: Separated hits, possible frame ERROR between 87 and 90, your sequence is shorter than subject: 143 - 585

Fln protein: LRQGTEHKGPSPRLPKFGEITLQVEETIxxKNYVLLIITDGVITDLQETKDAIIRASDLPLSILIVGVGGADFKEMEILDADKGEPLESSTGRVATRDIVQFVPLRNLPSEETIAQSLLAELPMQFLSYMKSRNIEPVVLES*

Protein Length: 144

Fln nts: CTCAGACAAGGAACTGAACACAAAGGACCAAGCCCGCGGCTACCAAAATTTGGAGAGATAACTCTACAAGTGGAGGAGACTATCGAxxxCAAAAACTATGTCCTCCTTATCATCACGGATGGAGTCATTACTGATCTTCAAGAAACAAAGGATGCCATCATCAGGGCTTCAGATCTGCCTCTTTCAATTCTTATTGTGGGTGTTGGTGGGGCAGATTTTAAAGAAATGGAGATCCTGGATGCAGATAAAGGCGAACCATTAGAAAGTTCCACTGGACGAGTCGCGACACGTGATATAGTGCAATTTGTTCCCCTGCGGAATTTGCCGAGTGAAGAAACAATTGCACAATCGCTGTTAGCTGAACTGCCCATGCAATTTTTGAGTTATATGAAGAGCAGAAATATAGAACCTGTTGTGCTAGAGAGTTGATTCACCGAAATGTAGTTTTGACA

Fln Alignment:

Root_euler_16835___LRQGTEHKGPSPRLPKFGEITLQVEETIDxKNYVLLIITDGVITDLQETKDAIIRASDLPLSILIVGVGGADFKEMEILDADKGEPLESSTGRVATRDIVQFVPLRNLPSEETIAQSLLAELPMQFLSYMKSRNIEP
B8LLG3________________LRQGAEHKGPSPRVQKFGELILQVEETIDxKYYVLLIITDGVITDLQETKDAIVRASDLPLSILIVGVGGADFKEMEILDADKGEPLESSTGRVATRDIVQFVPLRNLQSEETVAQSLLAELPMQFLSYMKSRHIEP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain