SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209300

Length: 443 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene209300
ATGTTCAACTCAATTTGGGGCGAGACTTTCCCCTGAATACCCGACGCGTTTTTTAGTGTAAGCAATTTCATTTATTCGGAGAAAGTAAGGAAGGAGCTCTCTCCGACAGCCGTTCCGGCCTTCCATCTCGATCTTCTCGAGAAGAGACGAATTGAACATCCAGGGTTTTCTTTGATTGATATATAACCACTGTATAGTTAGGCAGTCATGGGTTCAAACAAGGGGCAGGGTGGAATTCAGTTGTTACTGGCTGCAGAGCAGGAGGCACAACACATTGTTGCTTCTGCTAGAGCTGCAAAAATGGCTAGATTGAAACAAGCAAAAGATGAAGCTGAGAGGGAAATTGCTTCTTATCGGGCACAGAGGGAGGCTGAATTTCGGAAGAAGGTTGCAGAGACCAGTGGTGATTCTGGATCCAATGTTAAGCGACTTGACGAAGAAAC

Ace file of the UniGene sp_v3.0_unigene209300 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	V-type proton ATPase subunit G n=1 Tax=Citrus limon RepID=VATG_CITLI	-	-	7.0e-26	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Vacuolar ATP synthase subunit G plant, putative	-	-	2.651e-12	-

Source	Gene names
Sma3	6J23.3; 8F2.6; ATPvG; AVMA10; At3g01390; At4g23710; At4g25950; B0403H10-OSIGBa0105A11.13; CHLREDRAFT_59366; F20B18.60; GSVIVT00023190001; GSVIVT00038681001; GSVIVT00038685001; GSVIVT00038691001; GSVIVT00038692001; MICPUN_57558; MtrDRAFT_AC148995g23v2; OJ1

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	vacuolar proton-transporting V-type ATPase complex	GO:0016471	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	hydrogen-exporting ATPase activity, phosphorylative mechanism	GO:0008553	Molecular Function	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	GO:0016820	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	proton transport	GO:0015992	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Vacuolar (H+)-ATPase G subunit	IPR005124	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G01390.1	VMA10, AVMA10 vacuolar membrane ATPase 10 chr3:150265-150922 REVERSE LENGTH=110	7.0e-32	71%
RefSeq	Arabidopsis thaliana	NP_850489.1	V-type proton ATPase subunit G1 [Arabidopsis thaliana]	9.0e-32	71%
RefSeq	Populus trichocarpa	XP_002316363.1	predicted protein [Populus trichocarpa]	2.0e-32	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNM3

Fln msg: Distance to subject end: 31 aas, your sequence is shorter than subject: 78 - 110

Fln protein: MGSNKGQGGIQLLLAAEQEAQHIVASARAAKMARLKQAKDEAEREIASYRAQREAEFRKKVAETSGDSGSNVKRLDEE

Protein Length: 79

Fln nts: ATGTTCAACTCAATTTGGGGCGAGACTTTCCCCTGAATACCCGACGCGTTTTTTAGTGTAAGCAATTTCATTTATTCGGAGAAAGTAAGGAAGGAGCTCTCTCCGACAGCCGTTCCGGCCTTCCATCTCGATCTTCTCGAGAAGAGACGAATTGAACATCCAGGGTTTTCTTTGATTGATATATAACCACTGTATAGTTAGGCAGTC_-_ATGGGTTCAAACAAGGGGCAGGGTGGAATTCAGTTGTTACTGGCTGCAGAGCAGGAGGCACAACACATTGTTGCTTCTGCTAGAGCTGCAAAAATGGCTAGATTGAAACAAGCAAAAGATGAAGCTGAGAGGGAAATTGCTTCTTATCGGGCACAGAGGGAGGCTGAATTTCGGAAGAAGGTTGCAGAGACCAGTGGTGATTCTGGATCCAATGTTAAGCGACTTGACGAAGAAAC

Fln Alignment:

R_6m_Euler_2252___MGSNKGQGGIQLLLAAEQEAQHIVASARAAKMARLKQAKDEAEREIASYRAQREAEFRKKVAETSGDSGSNVKRLDEE
B8LNM3________________MDSNKGQGGIQLLLAAEQEAQHIVASARSAKMARLKQAKDEAEREIASYRAQRETEFRKKVAETSGDSGSNVKRLEEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain