SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209224

Length: 280 nt

UniGene Fasta

>sp_v3.0_unigene209224
GTGCACTGGCTCTTGTCAGCGCAGTCGCAGTTTCCGCAATCGCTCGACATGTCTGCAATAACAATTATCAGAAAAACAGATTACTTACACTTCTGAAGTTCTAAGTTCTCCCTCGTGCCCGAATTCGGTCTACGAGGGTGAAGTCCAGTGTCTGTGACATACCCCCAAAGGGCTTGAAGATGTCCTCTACTTTCATAGGCAACTCCACCTCAATACAGGAGATGTTCAGAAGAGTTAGCGAGCAATTTACTGCTATGTTCAGGAGAAAGGCTTTCTTGCA

Ace file of the UniGene sp_v3.0_unigene209224

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-tubulin (Fragment) n=2 Tax=core eudicotyledons RepID=B3GQU8_CITMA	-	-	4.0e-18	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Beta tubulin	-	-	9.959e-09	-

Source	Gene names
Sma3	At1g20010; At2g29550; At5g23860; At5g62690; F16P2.7; GSVIVT00000394001; GSVIVT00009147001; GSVIVT00014415001; GSVIVT00017326001; GSVIVT00017820001; GSVIVT00021443001; GSVIVT00024186001; GSVIVT00029807001; LOC_Os03g01530; LOC_Os03g56810; MRO11.10; OSTB-16;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G20010.1	TUB5 tubulin beta-5 chain chr1:6938033-6940481 REVERSE LENGTH=449	4.0e-23	93%
RefSeq	Arabidopsis thaliana	NP_564101.1	tubulin beta-5 chain [Arabidopsis thaliana]	5.0e-23	93%
RefSeq	Populus trichocarpa	XP_002307727.1	tubulin, beta chain [Populus trichocarpa]	6.0e-24	97%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT51

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 48 aas, your sequence is shorter than subject: 92 - 444

Fln protein: ALALVSAVAVSAIARHVCNNNYQKNRLLTLLKF*VLPRARIRSTRVKSSVCDIPPKGLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFL

Protein Length: 93

Fln nts: GTGCACTGGCTCTTGTCAGCGCAGTCGCAGTTTCCGCAATCGCTCGACATGTCTGCAATAACAATTATCAGAAAAACAGATTACTTACACTTCTGAAGTTCTAAGTTCTCCCTCGTGCCCGAATTCGGTCTACGAGGGTGAAGTCCAGTGTCTGTGACATACCCCCAAAGGGCTTGAAGATGTCCTCTACTTTCATAGGCAACTCCACCTCAATACAGGAGATGTTCAGAAGAGTTAGCGAGCAATTTACTGCTATGTTCAGGAGAAAGGCTTTCTTGCA

Fln Alignment:

inia_euler_4703___VKSSVCDIPPKGLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFL
C0PT51________________VKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain