SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209185

Length: 1654 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene209185

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Elongation factor 1-alpha n=193 Tax=Eukaryota RepID=EF1A_ARATH	-	-	90%
FL-Next	sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Elongation factor 1-alpha	-	-	-

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EF1A, eukaryotic/archaeal	IPR004539	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G60390.1	GTP binding Elongation factor Tu family protein chr5:24289226-24290675 FORWARD LENGTH=449	90%
RefSeq	Arabidopsis thaliana	NP_001030993.1	Elongation factor 1-alpha [Arabidopsis thaliana]	90%
RefSeq	Populus trichocarpa	XP_002326338.1	predicted protein [Populus trichocarpa]	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWR1

Fln msg:

Fln protein: MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKRVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVSEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGTIVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASDSKNDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFAEIMTKVDPKFLKNGDAGFVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPSGAKEVNVPAK*

Protein Length: 437

Fln nts: GCTCTCTACGCCGCTGCGAAGCTGTTCTGTGGTGCTTCTGATTCTCCAGACTCAGGCAGCCGTGTTTGTAAGAGAATTTAGTTCATC_-_ATGGGAAAGGAGAAAACCCATATCAACATTGTGGTTATTGGCCATGTCGACTCCGGCAAGTCAACAACCACTGGGCATTTGATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAACGTTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCTGAACGTGAACGTGGTATCACAATTGATATTGCACTGTGGAAGTTTGAGACAACTAAATACTACTGCACTGTGATTGATGCCCCTGGCCATCGTGATTTCATCAAGAACATGATTACTGGAACATCTCAGGCTGACTGTGCAGTTTTGATCATCGACTCCACCACTGGAGGTTTTGAAGCTGGTATTTCCAAGGACGGTCAGACGAGAGAACATGCCCTATTGGCGTTCACCTTGGGAGTGAAGCAAATGATTTGCTGCTGTAACAAGATGGATGCCACTACTCCCAAGTACTCTAAGGCTCGTTATGATGAAATTGTTAAGGAAGTATCTTCTTATTTGAAGAGGGTTGGATACAACCCGGACAAGATTCCTTTTGTGCCCATCTCTGGTTTTGAGGGTGACAATATGATTGAGCGTTCTACCAACCTTGATTGGTACAAGGGTCCAACACTCTTGGAAGCTCTGGACCAGGTTTCAGAGCCAAAGCGTCCTTCAGACAAGCCTCTGAGGTTGCCTCTTCAGGATGTTTACAAGATTGGTGGTATTGGGACTGTGCCTGTTGGTCGTGTGGAAACTGGAGTCATAAAACCAGGTACGATTGTTACCTTTGGTCCCACTGGTCTGACAACTGAAGTTAAGTCTGTTGAAATGCATCATGAAGCTCTTCAGGAGGCATTGCCTGGTGACAATGTGGGATTCAATGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTGGCATCTGATTCCAAGAATGATCCAGCAAAGGAAGCTGCCAACTTTACCGCACAGGTTATTATTATGAATCATCCAGGACAGATTGGAAATGGTTATGCCCCTGTGTTGGATTGTCACACTTGCCACATTGCCGTCAAGTTTGCTGAGATCATGACCAAGGTTGACCCCAAGTTTCTTAAGAATGGAGATGCTGGATTTGTTAAGATGATTCCAACCAAACCCATGGTTGTCGAAACTTTTGCAGAGTATCCTCCATTGGGTCGTTTTGCAGTCAGGGACATGCGTCAGACGGTTGCTGTAGGAGTCATCAAAGCTGTTGAAAAGAAGGAACCTAGTGGTGCAAAAGAAGTGAATGTTCCAGCAAAGTGA___TTGGGAATGGAGGATTGCGTGCTGCATTTCGTGTGCTTCCATGCTTATGCTTCACTATTTTCCCGATAGTATGTTAGTAGAGTTAGTTTTCCAAATGCAGAATTGGGTTCTTGATCGGCGGTGGCATAGGTTACATTATTTTCTAGTAAATACTTTTTAATGGTTACATTAGGCTAAAGTTGATTTAAGATTTCGTAGTTGGGGGAAATCATGAGTTTGTCTGCACTGCAAGGAAATCTATGCAGTTGGATTGAGGGAG

Fln Alignment:

inia_euler_2277___MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKRVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVSEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGTIVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASDSKNDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFAEIMTKVD----------PKFLKNGDAGFVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPSGAKEVNVPAK
A9NWR1________________MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETNKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKRVGYNPDKIPFVPISGFEGDNMIERSNNLDWYKGPTLLEALDQVSEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGTIVTFGPTGLTTEVKSVEMHHEALQEAYPGDNVGFNVKNVAVKDLKRGYVASDSKNDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFSEIMTKVDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPTGAKVTKAAAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain