SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209151

Length: 283 nt

UniGene Fasta

>sp_v3.0_unigene209151
ATCGGACTATAAAGCTTTTCGGCCTGAACGCCTCCGATACCCCAACCCTTCTGGCCTCGCTTACGGGTCACGAAGGCCCTGTCTGGCAGGTCGCTTGGGCTCACCCAAAGTTCGGGTCCATGCTCGCTTCCTGCTCATATGACGGACGCGTAATAATCTGGGAATGGTCGCAGGTTCAAGTCTTCAAAGAGCACGAGGCCTCTGTGAATTCGATCTCATGGGCACCCAATGAATTGGGACTCTGCCTGGCCTGTGGTTCCTCTGACGGGTCCATAACCGTCTT

Ace file of the UniGene sp_v3.0_unigene209151

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein transport SEC13-like protein n=1 Tax=Solanum tuberosum RepID=Q2PYY1_SOLTU	-	-	2.0e-33	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%

Source	Gene names
Sma3	At2g30050; At3g01340; CHLREDRAFT_139713; GSVIVT00001653001; GSVIVT00020856001; GSVIVT00033406001; LOC_Os03g61630; MICPUCDRAFT_48340; MICPUN_95648; OJ1058_C08.35; OSJNBa0003K21.19; OSJNBa0078D06.24; OSJNBa0081C13.10; OSJNBb0027B08.3; Os02g0135800; Os03g083

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	viral capsid	GO:0019028	Cellular Component	-
Sma3	1-alkyl-2-acetylglycerophosphocholine esterase activity	GO:0003847	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G01340.1	Transducin/WD40 repeat-like superfamily protein chr3:127557-128465 REVERSE LENGTH=302	4.00001e-40	63%
RefSeq	Arabidopsis thaliana	NP_186783.1	transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]	6.0e-40	63%
RefSeq	Populus trichocarpa	XP_002321555.1	predicted protein [Populus trichocarpa]	4.99983e-42	67%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0I2

Fln msg: Distance to subject end: 168 aas, atg_distance in limit (1-15): atg_distance = 15, W2: There is no M at the beginning, your sequence is shorter than subject: 93 - 283

Fln protein: RTIKLFGLNASDTPTLLASLTGHEGPVWQVAWAHPKFGSMLASCSYDGRVIIWEWSQVQVFKEHEASVNSISWAPNELGLCLACGSSDGSITV

Protein Length: 94

Fln nts: ATCGGACTATAAAGCTTTTCGGCCTGAACGCCTCCGATACCCCAACCCTTCTGGCCTCGCTTACGGGTCACGAAGGCCCTGTCTGGCAGGTCGCTTGGGCTCACCCAAAGTTCGGGTCCATGCTCGCTTCCTGCTCATATGACGGACGCGTAATAATCTGGGAATGGTCGCAGGTTCAAGTCTTCAAAGAGCACGAGGCCTCTGTGAATTCGATCTCATGGGCACCCAATGAATTGGGACTCTGCCTGGCCTGTGGTTCCTCTGACGGGTCCATAACCGTCTT

Fln Alignment:

Hyp_os_Euler_4270___RTIKLFGLNASDTPTLLASLTGHEGPVWQVAWAHPKFGSMLASCSYDGRVIIWE-------WSQVQVFKEHEASVNSISWAPNELGLCLACGSSDGSITV
A9P0I2________________RTIKLFGLNASDTPTLLASLTGHEGPVWQVAWAHPKFGSILASCSYDRRVIIWQEGQQENAWSQLQVFKEHEASVNSVSWAPHELGLCLACGSSDGSITV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain