SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209112

Length: 300 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene209112
TCTGCGAGTGATTGTTTGGAGGGAAGAGCACGGAAGAGAGACAGTAATGGTGAGGGGAAAGACAGAGATGAAGAGGATCGAGAATACGGCCAGAAGGCAGGTTACCTTACTAAACGCAGGAATGGGTTGCTGAAGAAAGCTTACGAGCTCTCGGTGCTCTGCGATGTGGAAATTGGACTTGTGGTTTTCTCTCCAAGAGGCAAGCTTCATGAATTCGCCAGTCCCAGCATGCAGAAAGTGTTAGAGAGGTATCACGGTACGGATGATGTCACCCAAGAGCATGATAATGAGGATTTAAAC

Ace file of the UniGene sp_v3.0_unigene209112 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative MADS box transcription factor PrMADS7 n=1 Tax=Pinus radiata RepID=O24491_PINRA	-	-	2.0e-18	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	MADS-box transcription factor	-	-	6.341e-20	-

Source	Gene names
Sma3	AG; AG-1; AG1; AG1-T2; AG2; AGL; AGL1; AGL11; AGL16; AGL2-1; AGL2-2; AGL2-3; AGL21; AGL28; AGL30; AGL38; AGL39; AGL5; AGL6; AOM1; AOM4; AVAG1; AVAG2; ApMADS2; At2g42830; At3g02310; At3g58780; BnSHP1; CAG1; CAG3; CAGL2; CMB1; CUM1; CUM10; CiSEP1; CitMADS1;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, MADS-box	IPR002100	-	0.0	-
Sma3	Transcription factor, K-box	IPR002487	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G62165.1	AGL42 AGAMOUS-like 42 chr5:24965075-24968437 FORWARD LENGTH=210	3.0e-19	58%
RefSeq	Arabidopsis thaliana	NP_001190593.1	protein agamous-like 42 [Arabidopsis thaliana]	3.0e-19	58%
RefSeq	Populus trichocarpa	XP_002320747.1	MIKC mads-box transcription factor PTM5 [Populus trichocarpa]	1.0e-19	77%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2G7

Fln msg: Distance to subject end: 116 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 100 - 201

Fln protein: SASDCLEGRARKRDSNGEGKDRDEEDREYGQKAGYLTKRRNGLLKKAYELSVLCDVEIGLVVFSPRGKLHEFASPSMQKVLERYHGTDDVTQEHDNEDLN

Protein Length: 101

Fln nts: TCTGCGAGTGATTGTTTGGAGGGAAGAGCACGGAAGAGAGACAGTAATGGTGAGGGGAAAGACAGAGATGAAGAGGATCGAGAATACGGCCAGAAGGCAGGTTACCTTACTAAACGCAGGAATGGGTTGCTGAAGAAAGCTTACGAGCTCTCGGTGCTCTGCGATGTGGAAATTGGACTTGTGGTTTTCTCTCCAAGAGGCAAGCTTCATGAATTCGCCAGTCCCAGCATGCAGAAAGTGTTAGAGAGGTATCACGGTACGGATGATGTCACCCAAGAGCATGATAATGAGGATTTAAAC

Fln Alignment:

Hyp_os_Euler_91___TKRRNGLLKKAYELSVLCDVEIGLVVFSPRGKLHEFASPSMQKVLERYHGTDDVTQEHDNEDLN
A9P2G7________________SKRRNGLLKKAYELSVLCDAEVGLMIFSSSGKLHEFASPSMQKMVERHHSTHNTTNEQDNKGLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain