SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209061

Length: 499 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene209061
CGATCCTAATGGCCTTGTGTATACCAATTTGCTGGACCAGCAGCTTGATGCGGTTGTAGCTGCGATGAGCAAACTGGGTTATGAGGACATTAGGTTAATCATAGCTGAAACTGGGTGGCCCAATGCCGGTGACCTTAATCAGTTGGGTGCCAACATCTTTAATTCAGCCCATTATAACCGGCGGCTCATAAGGAGAATGGTTGCAGATCCTCCCCTGGGAACCCCTCGCAGGCCCAATCAATTCATCCCCACATACATTTTTTTATTGTATGATGAGGATAAAATGTCTGGACCGGTGACTGAGAGGCATTGGGGTTTTGTGTATCCAAATGGAACCTTGATGTATGAGATTGATCTCACTGGGAAGCTCCAGGATTCGGACTATGGGCCTCTCCCTCCTCCGCCTCCACCCTACAAGGGCAAATTGTGGTGTGTTGCAGATCCCACTGCAGATGTTTATGTCTTGCCCTCCGCTGTCGATTCTGCTTGCAGTCAGGGA

Ace file of the UniGene sp_v3.0_unigene209061 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycosyl hydrolase family 17 [Silene latifolia]	-	-	9.94922e-44	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Putative beta-1,3-glucanase	-	-	1.453e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glucan endo-1,3-beta-D-glucosidase.	EC:3.2.1.39	-	1.573e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		1.573e-06	%

Source	Gene names
Sma3	A6; At3g07320; At3g07320/T1B9_1; At3g23770; At4g14080; BoA6; BrA6; F21O3.3; GSVIVT00033506001; LOC_Os03g62860; OJ1191_A10.121; OSJNBa0032G11.29; OSJNBb0043P23.24; Os03g0845600; Os08g0525800; Os09g0502200; OsI_14305; OsI_29967; OsI_31928; OsJ_13350; OsJ_29

Source	GOs	Term	Type	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	glucan endo-1,3-beta-D-glucosidase activity	GO:0042973	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G07320.1	O-Glycosyl hydrolases family 17 protein chr3:2332324-2333925 REVERSE LENGTH=460	50%
RefSeq	Arabidopsis thaliana	NP_683538.1	O-Glycosyl hydrolases family 17 protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002298669.1	predicted protein, partial [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAN5

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 166 - 462

Fln protein: DPNGLVYTNLLDQQLDAVVAAMSKLGYEDIRLIIAETGWPNAGDLNQLGANIFNSAHYNRRLIRRMVADPPLGTPRRPNQFIPTYIFLLYDEDKMSGPVTERHWGFVYPNGTLMYEIDLTGKLQDSDYGPLPPPPPPYKGKLWCVADPTADVYVLPSAVDSACSQG

Protein Length: 167

Fln nts: CGATCCTAATGGCCTTGTGTATACCAATTTGCTGGACCAGCAGCTTGATGCGGTTGTAGCTGCGATGAGCAAACTGGGTTATGAGGACATTAGGTTAATCATAGCTGAAACTGGGTGGCCCAATGCCGGTGACCTTAATCAGTTGGGTGCCAACATCTTTAATTCAGCCCATTATAACCGGCGGCTCATAAGGAGAATGGTTGCAGATCCTCCCCTGGGAACCCCTCGCAGGCCCAATCAATTCATCCCCACATACATTTTTTTATTGTATGATGAGGATAAAATGTCTGGACCGGTGACTGAGAGGCATTGGGGTTTTGTGTATCCAAATGGAACCTTGATGTATGAGATTGATCTCACTGGGAAGCTCCAGGATTCGGACTATGGGCCTCTCCCTCCTCCGCCTCCACCCTACAAGGGCAAATTGTGGTGTGTTGCAGATCCCACTGCAGATGTTTATGTCTTGCCCTCCGCTGTCGATTCTGCTTGCAGTCAGGGA

Fln Alignment:

Hyp_Euler_210___DPNGLVYTNLLDQQLDAVVAAMSKLGYEDIRLIIAETGWPNAGDLNQLGANIFNSAHYNRRLIRRMVADPPLGTPRRPNQFIPTYIFLLYDEDKMSGPVTERHWGFVYPNGTLMYEIDLTGKLQDSDXXXXXXXXXXXXXXLWCVADPTADVYVLPSAVDSACSQG
D5AAN5________________DPNGLVYTNLLDQQLDAVIAAMSKLGYEDIRLVIAETGWPNAGDLNQLGANIFNAAHYNRRIIRRMLADPPLGTPRRPNQFIPTYIFSLFNENQKTGLGTERHWGLLYPNGSRLYEIDLTGELQDSEYKPLPPPPPPYKGKLWCVVDANANVSALPSAITYACSQG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain