SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209004

Length: 362 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene209004
CGCTAAGGATTTTGATATCTGTTGAGTTTCTGGATATCTGATCCAAAGAATTTTGTGTCGGGTCTAGGTTTAGGCTTTGGATTCCTATTGTTGGTTATTGGGTTCACTGTTTTAGTTGATTGGAATATCAATGGCGGATGTCAGCATGGAGACCGGCGACGTTGAGACTTTTGCTTTCCAGGCTGAAATTAATCAGTTGCTCAGCCTCATCATCAACACTTTCTACAGCAACAAGGAGATTTTCCTGCGGGAGCTCATCAGCAATTCGTCTGATGCGCTGGACAAAACTTCGGTTCGAAGCGCTGACGGATAAGAGCAAGCTGGATGCTCAGCCGGAGCTCTTCATCCGGCTTGTTCCCGAT

Ace file of the UniGene sp_v3.0_unigene209004 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat shock protein, putative n=1 Tax=Ricinus communis RepID=B9RCG8_RICCO	-	-	2.0e-25	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Heat shock protein 90	-	-	0.0	-

Source	Gene names
Sma3	At3g07770; At4g24190; At5g52640; At5g56000; At5g56010; At5g56030; CHLREDRAFT_138117; CHLREDRAFT_97057; F17A17.11; GSVIVT00002551001; GSVIVT00012749001; GSVIVT00013101001; GSVIVT00014401001; GSVIVT00033437001; GSVIVT00037726001; HSC80; HSP81-1; HSP81-2; HS

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	protein secretion	GO:0009306	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L28	IPR001383	-	-
Sma3	Heat shock protein Hsp90	IPR001404	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Molecular chaperone, heat shock protein, endoplasmin	IPR015566	-	-
Sma3	Late embryogenesis abundant protein, LEA-18	IPR018930	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G52640.1	HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90.1, AtHsp90-1, HSP90.1 heat shock protein 90.1 chr5:21352542-21355147 FORWARD LENGTH=705	1.0e-27	84%
RefSeq	Arabidopsis thaliana	NP_200076.1	heat shock protein 81-1 [Arabidopsis thaliana]	1.0e-27	84%
RefSeq	Populus trichocarpa	XP_002327494.1	predicted protein [Populus trichocarpa]	6.0e-28	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLU0

Fln msg: Overlapping hits, possible frame ERROR between 301 and 285, Distance to subject end: 17 aas,

Fln protein: MADVSMETGDVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDxxxxxxxLTDKSKLDAQPELFIRLVPD

Protein Length: 79

Fln nts: CGCTAAGGATTTTGATATCTGTTGAGTTTCTGGATATCTGATCCAAAGAATTTTGTGTCGGGTCTAGGTTTAGGCTTTGGATTCCTATTGTTGGTTATTGGGTTCACTGTTTTAGTTGATTGGAATATCA_-_ATGGCGGATGTCAGCATGGAGACCGGCGACGTTGAGACTTTTGCTTTCCAGGCTGAAATTAATCAGTTGCTCAGCCTCATCATCAACACTTTCTACAGCAACAAGGAGATTTTCCTGCGGGAGCTCATCAGCAATTCGTCTGATGCGCTGGACxxxxxxxxxxxxxxxxxxxxxCTGACGGATAAGAGCAAGCTGGATGCTCAGCCGGAGCTCTTCATCCGGCTTGTTCCCGAT

Fln Alignment:

Hyp_Euler_1136___ETGDVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDxxxxxxLTDKSKLDAQPELFIRLVPD
A9NLU0________________EAGEVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDxxxxxxLTDKSKLDAQPELFIHIIPD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain