SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208854

Length: 165 nt

UniGene Fasta

>sp_v3.0_unigene208854
CTTTGAATGGACACATCAACGAGGCTATGAAGCTCTTTCAAAAAATGCCTGAACAAGATGTGCCATCATGGAATGTAATAATTGACGGATATGCACAGAATGGTAATGATGAAGAGGCCCTAAATCTTTACCAACAAATGCAATTTGCAGGTGTAAAATCACATT

Ace file of the UniGene sp_v3.0_unigene208854

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|A8MQA3.2\|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065 gb\|AEE84394.1\| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	-	-	5.0e-08	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G21065.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:11245976-11247763 FORWARD LENGTH=595	7.0e-12	50%
RefSeq	Arabidopsis thaliana	NP_001078415.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	7.0e-12	50%
RefSeq	Populus trichocarpa	XP_002310922.1	predicted protein [Populus trichocarpa]	7.0e-11	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Distance to subject end: 156 aas, your sequence is shorter than subject: 54 - 644

Fln protein: LNGHINEAMKLFQKMPEQDVPSWNVIIDGYAQNGNDEEALNLYQQMQFAGVKSH

Protein Length: 55

Fln nts: CTTTGAATGGACACATCAACGAGGCTATGAAGCTCTTTCAAAAAATGCCTGAACAAGATGTGCCATCATGGAATGTAATAATTGACGGATATGCACAGAATGGTAATGATGAAGAGGCCCTAAATCTTTACCAACAAATGCAATTTGCAGGTGTAAAATCACATT

Fln Alignment:

biogeco3_euler_4744___NGHINEAMKLFQKMPEQDVPSWNVIIDGYAQNGNDEEALNLYQQMQFAGVK
B8LLJ0________________NGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain