SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208785

Length: 232 nt

UniGene Fasta

>sp_v3.0_unigene208785
AATCAAAGAGATTATAGAGAAGCAGGCTGATGTAAATGGGTGCACAGCATTTACTGATTTTAAAGAAGAAGAAAGCCCTGAATATCCTCCTACTGTCAATAATGAAATGATGCATAATCATGTGCAAAAGGTTGGAGAAACATTGCTTGGGGTAGATAATGTTAAGTATGGAGGTCAGAAAATGGGAGCGGAGGATTTTTCCTTTTATTCACAGACAATACCAGGTGCTTTT

Ace file of the UniGene sp_v3.0_unigene208785

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	IAA-amino acid hydrolase ILR1-like 3 n=5 Tax=Oryza sativa RepID=ILL3_ORYSJ	-	-	3.0e-17	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on carbon-nitrogen bonds, other than peptide bonds, In linear amides.	EC:3.5.1.-	-	1.57e-10	-

Source	KEGGs	Term	e value	Identity
Sma3	Lysine biosynthesis	00300	1.57e-10	%
Sma3	Fluorobenzoate degradation	00364	1.57e-10	%
Sma3	Glutathione metabolism	00480	1.57e-10	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	1.57e-10	%
Sma3	Lipopolysaccharide biosynthesis	00540	1.57e-10	%
Sma3	Sphingolipid metabolism	00600	1.57e-10	%
Sma3	Metabolic pathways	01100	1.57e-10	%
Sma3	Biosynthesis of secondary metabolites	01110	1.57e-10	%

Source	Gene names
Sma3	GSVIVT00021551001; ILL3; ILL4; ILL7; ILL9; LOC_Os03g62060; LOC_Os03g62070; LOC_Os07g14590; OSJNBa0042I09.28; OSJNBa0042I09.29; OSJNBa0096I06.2; Os03g0836800; Os03g0836900; Os07g0249700; OsI_14226; OsI_14227; OsI_25527; OsJ_13277; OsJ_23715; P0021G06.114;

Source	GOs	Term	Type	Identity
Sma3	metallopeptidase activity	GO:0008237	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M20	IPR002933	-	-
Sma3		IPR010168	-	-
Sma3	Peptidase M20, dimerisation	IPR011650	-	-
Sma3	Amidohydrolase	IPR017439	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G51760.1	IAR3, JR3 peptidase M20/M25/M40 family protein chr1:19199562-19201424 FORWARD LENGTH=440	9.0e-19	48%
RefSeq	Arabidopsis thaliana	NP_175587.1	IAA-amino acid hydrolase ILR1-like 4 [Arabidopsis thaliana]	1.0e-18	48%
RefSeq	Populus trichocarpa	XP_002302231.1	iaa-amino acid hydrolase 9 [Populus trichocarpa]	1.0e-20	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMJ2

Fln msg: Distance to subject end: 52 aas, your sequence is shorter than subject: 77 - 456

Fln protein: IKEIIEKQADVNGCTAFTDFKEEESPEYPPTVNNEMMHNHVQKVGETLLGVDNVKYGGQKMGAEDFSFYSQTIPGAF

Protein Length: 78

Fln nts: AATCAAAGAGATTATAGAGAAGCAGGCTGATGTAAATGGGTGCACAGCATTTACTGATTTTAAAGAAGAAGAAAGCCCTGAATATCCTCCTACTGTCAATAATGAAATGATGCATAATCATGTGCAAAAGGTTGGAGAAACATTGCTTGGGGTAGATAATGTTAAGTATGGAGGTCAGAAAATGGGAGCGGAGGATTTTTCCTTTTATTCACAGACAATACCAGGTGCTTTT

Fln Alignment:

biogeco3_euler_4808___IKEIIEKQADVNGCTAFTDFKEEESPEYPPTVNNEMMHNHVQKVGETLLGVDNVKYGGQKMGAEDFSFYSQTIPGAF
B8LMJ2________________IKEIIEKQAAVNGCTGFVDFKEDTHPEYPPTVNDEKLHNHVKKAGQTLLGAHNVKDANPVMGAEDFAFYTHIIPGAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain