SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208780

Length: 258 nt

UniGene Fasta

>sp_v3.0_unigene208780
AAAGGTCCTGTAACCGATATCCACTCTGGGATATCAGTACTGGTAACAGAAGGCAATTCTGCAGAGAACAGCAATGAAGTCATGGTTGCTGACGATGACAAGAAATTGAAAGGCAAATGGCCTCAAAGAGGTGAAGACCATACAATTCCTCAAGCACTAATGAGTTTAGATTTGTGGATACTTTTCATAGCAACAACATGTGGATTGGGATCTACAATTACTGCAATTGACAACATGGGACAGATTGGAAAATCCTTG

Ace file of the UniGene sp_v3.0_unigene208780

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Nodulin family protein, putative, expressed	-	-	7.606e-13	-

Source	Gene names
Sma3	At2g28120; At2g28120/F24D13.9; At2g39210; GSVIVT00000612001; GSVIVT00018121001; GSVIVT00018122001; GSVIVT00018125001; GSVIVT00022162001; LOC_Os03g47810; LOC_Os03g58580; LOC_Os12g44060; LOC_Os12g44070; OSJNBa0052F07.13; OSJNBb0002L09.1; OSJNBb0070O09.5; OS

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G28120.1	Major facilitator superfamily protein chr2:11985934-11987667 FORWARD LENGTH=577	3.0e-15	69%
RefSeq	Arabidopsis thaliana	NP_180379.1	major facilitator protein [Arabidopsis thaliana]	4.0e-15	69%
RefSeq	Populus trichocarpa	XP_002326206.1	predicted protein, partial [Populus trichocarpa]	6.0e-16	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: Distance to subject end: 210 aas, your sequence is shorter than subject: 86 - 626

Fln protein: KGPVTDIHSGISVLVTEGNSAENSNEVMVADDDKKLKGKWPQRGEDHTIPQALMSLDLWILFIATTCGLGSTITAIDNMGQIGKSL

Protein Length: 87

Fln nts: AAAGGTCCTGTAACCGATATCCACTCTGGGATATCAGTACTGGTAACAGAAGGCAATTCTGCAGAGAACAGCAATGAAGTCATGGTTGCTGACGATGACAAGAAATTGAAAGGCAAATGGCCTCAAAGAGGTGAAGACCATACAATTCCTCAAGCACTAATGAGTTTAGATTTGTGGATACTTTTCATAGCAACAACATGTGGATTGGGATCTACAATTACTGCAATTGACAACATGGGACAGATTGGAAAATCCTTG

Fln Alignment:

biogeco3_euler_1238___PQRGEDHTIPQALMSLDLWILFIATTCGLGSTITAIDNMGQIGKSL
B8LRH5________________PRIGEDHTIFQAIQKFDFWLLFFAFLCGVGTGMAVINNMGQIGLAM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain