SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208727

Length: 220 nt

UniGene Fasta

>sp_v3.0_unigene208727
TTTTACTGTGCCATGAAATCTGACTATGGAGGGTGGGTTTCTGGTTTTGCTCCTCTAGCAGTTGGAGTCGATGAGCCTTCTGCAGTGGAAGAGTTCAGGAGAACGATGATGAATATGAAGCCTGAAATTGCAGTTGCAGTGGCAAAGACCATCTTTGAGAGTGATATGAGAAACATTTTATGTGATGTGAAGACGCCATGTAGCATTATCCAGACACATT

Ace file of the UniGene sp_v3.0_unigene208727

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sigma factor sigb regulation protein rsbq, putative n=1 Tax=Ricinus communis RepID=B9R708_RICCO	-	-	4.0e-17	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Sigma factor sigb regulation protein rsbq, putative	-	-	1.07e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Carboxylesterase.	EC:3.1.1.1	-	1.754e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	1.754e-06	%
Sma3	Drug metabolism - other enzymes	00983	1.754e-06	%
Sma3	Metabolic pathways	01100	1.754e-06	%
Sma3	Biosynthesis of secondary metabolites	01110	1.754e-06	%

Source	Gene names
Sma3	AT4g37470; At4g37470; F6G17.120; GSVIVT00014956001; GSVIVT00019624001; LOC_Os03g32270; OSJNBa0054H04.8; Os03g0437600; OsI_12193; OsJ_11398; PHYPADRAFT_190706; PHYPADRAFT_213263; PHYPADRAFT_215526; PHYPADRAFT_234012; PHYPADRAFT_61272; POPTRDRAFT_558923; PO

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity	GO:0016787	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G03990.1	alpha/beta-Hydrolases superfamily protein chr3:1033788-1034591 FORWARD LENGTH=267	3.0e-21	52%
RefSeq	Arabidopsis thaliana	NP_566220.1	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana]	4.0e-21	52%
RefSeq	Populus trichocarpa	XP_002302409.1	predicted protein [Populus trichocarpa]	4.0e-23	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NP95

Fln msg: Distance to subject end: 66 aas, your sequence is shorter than subject: 73 - 283

Fln protein: FYCAMKSDYGGWVSGFAPLAVGVDEPSAVEEFRRTMMNMKPEIAVAVAKTIFESDMRNILCDVKTPCSIIQTH

Protein Length: 74

Fln nts: TTTTACTGTGCCATGAAATCTGACTATGGAGGGTGGGTTTCTGGTTTTGCTCCTCTAGCAGTTGGAGTCGATGAGCCTTCTGCAGTGGAAGAGTTCAGGAGAACGATGATGAATATGAAGCCTGAAATTGCAGTTGCAGTGGCAAAGACCATCTTTGAGAGTGATATGAGAAACATTTTATGTGATGTGAAGACGCCATGTAGCATTATCCAGACACATT

Fln Alignment:

biogeco3_euler_1107___YCAMKSDYGGWVSGFAPLAVGVDEPSAVEEFRRTMMNMKPEIAVAVAKTIFESDMRNILCDVKTPCSIIQT
A9NP95________________YYALKSHYAAWASGFAPLAVGVDEPSVVEEFRRTMMNMKPEIALAVAKTIFESDMRSILCDVKTPCSIIQT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain