SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208675

Length: 494 nt

UniGene Fasta

>sp_v3.0_unigene208675
CGGGACAAATAACCCACTGCTACTTCTGCAACTCTTGTTTAATGGGTTTCTGGTTTCTGTTTCCGGCCATGGCCGTCGCCACCCTCGTCGTCTTCCTGAAGGCGGCGGCTTCTACACGTGAAGGTGAAATGAATATGGTGTTCTATATGCACGACAATGTGAAAGGAAATAACGTGACGGCCATCGCGGTGGCGGGATCAAATGGTTCTTCTTCAGTTCCTGGCCATTTTGGCACGGTCGTCGTTATCAGCGATGTTATCACTATAAGCCCGCAATTAACGCAGTCGGACTCTCGGAACATTGTAGGTCGAGCGCAAGGAATGTACGTCAATACAAACCTTGAGACTGGGCGTGTATTTTTTAATGGTTTTCACAGTAATCTTCAACAATATGGAGTACAACGGAAGCACACTGGAGGTGCACGGAACTGATAGGTTCGATGAGCCACAGCGCGAGTATGCTGTAATTGGAGGAACGGGCAAATTCAGATTTGC

Ace file of the UniGene sp_v3.0_unigene208675

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dirigent-like protein n=2 Tax=Picea sitchensis RepID=A6YR04_PICSI	-	-	2.0e-39	58%
FL-Next	tr=Dirigent-like protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Dirigent-like protein	-	-	2.229e-20	-

Source	Gene names
Sma3	DIR9;

Source	InterPros	Term	Type	e value	Identity
Sma3	Plant disease resistance response protein	IPR004265	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G22900.1	Disease resistance-responsive (dirigent-like protein) family protein chr1:8103910-8104491 REVERSE LENGTH=193	5.0e-13	46%
RefSeq	Arabidopsis thaliana	NP_173703.2	disease resistance-responsive, dirigent domain-containing protein [Arabidopsis thaliana]	6.0e-13	46%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A6YR04

Fln msg: Overlapping hits, possible frame ERROR between 359 and 349, Distance to subject end: 26 aas, your sequence is shorter than subject: 151 - 172

Fln protein: MGFWFLFPAMAVATLVVFLKAAASTREGEMNMVFYMHDNVKGNNVTAIAVAGSNGSSSVPGHFGTVVVISDVITISPQLTQSDSRNIVGRAQGMYVNTNLETxxxxxLMVFTVIFNNMEYNGSTLEVHGTDRFDEPQREYAVIGGTGKFRF

Protein Length: 152

Fln nts: CGGGACAAATAACCCACTGCTACTTCTGCAACTCTTGTTTA_-_ATGGGTTTCTGGTTTCTGTTTCCGGCCATGGCCGTCGCCACCCTCGTCGTCTTCCTGAAGGCGGCGGCTTCTACACGTGAAGGTGAAATGAATATGGTGTTCTATATGCACGACAATGTGAAAGGAAATAACGTGACGGCCATCGCGGTGGCGGGATCAAATGGTTCTTCTTCAGTTCCTGGCCATTTTGGCACGGTCGTCGTTATCAGCGATGTTATCACTATAAGCCCGCAATTAACGCAGTCGGACTCTCGGAACATTGTAGGTCGAGCGCAAGGAATGTACGTCAATACAAACCTTGAGACTxxxxxxxxxxxxxxxTTAATGGTTTTCACAGTAATCTTCAACAATATGGAGTACAACGGAAGCACACTGGAGGTGCACGGAACTGATAGGTTCGATGAGCCACAGCGCGAGTATGCTGTAATTGGAGGAACGGGCAAATTCAGATTTGC

Fln Alignment:

biogeco3_euler_16106___MGFWFLFPAMAVATLVVFLKAAASTREGEMNMVFYMHDNVKGNNVTAIAVAGSNGSSSVPGHFGXXXXXXXXXXXXPQLTQSDSRNIVGRAQGMYVNTNLETxxxxLMVFTVIFNNMEYNGSTLEVHGTDRFDEPQREYAVIGGTGKFR
A6YR04________________MGSGFSFSAMAV---IVFLLAVAG--EAEINMVFYIHDNLRGSNVTAIPVAGLNGSSSNAGKFGTIVTISDVITRRPQITESDSDNIVGRAQGTYVNTNPVTxxxxLMVMTIVFQDMEYNGSTLEIQGTDRFTQPQREFAVVGGTGKFR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain