SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208594

Length: 459 nt

UniGene Fasta

>sp_v3.0_unigene208594
AATGTGCAATCAGATTGGATCCTTCCTATGCCCGGGCTCACCACAGACTTGCATCACTCTATCTCAATTTAGGGCAGGTAGATAATGCCAGAAGGCAATTCAATCTATCAGGACAGCATTCAGATAGGGCTGATATTCAGAGGCTGCAGAATGTGGAGATGCATTTAACAAAGTGTGTGGAAGCTCGGAGAACAGGAGATTGGCATGGTGTATTAAGAGAGAGCGATGCAGCATTTGTTGCTGGTGCTGAATCTTCACCGCAGGTATTCGCATCTAAAGCTGAGGCATTATTTGCCCAAGCCAGCAAGGCCTGGAGAATTCAGTGAAGCATTATTACAGCGTCTAGACAGAAAGATGCAGTCTTTATCTGCAAAACCATTACCTTATCATTCACACATTCAGTTCTGAAACACCTATAGACAGCAGAATAAAATGGATTTGATTCATATAGGAAGAGTA

Ace file of the UniGene sp_v3.0_unigene208594

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tetratricopetide-repeat thioredoxin-like 3 [Arabidopsis thaliana] gb\|AAK32908.1\|AF367321_1 At2g42580/F14N22.15 [Arabidopsis thaliana] gb\|AAD22995.2\| expressed protein [Arabidopsis thaliana] gb\|AAN28880.1\| At2g42580/F14N22.15 [Arabidopsis thaliana] gb\|AEC1	-	-	2.0e-26	60%
FL-Next	sp=Inactive TPR repeat-containing thioredoxin TTL3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%

Source	Gene names
Sma3	At1g53300; At2g42580; At3g58620; F14P22.210; GSVIVT00018728001; GSVIVT00027802001; OJ1007_H05.8; Os01g0218200; Os05g0587300; OsI_00914; OsI_08974; OsI_18876; OsI_21184; OsJ_00894; OsJ_08417; OsJ_19721; P0489G09.8; P0665D10.23; PHYPADRAFT_179732; POPTRDRAF

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3		IPR012335	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR015609	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G42580.1	TTL3, VIT tetratricopetide-repeat thioredoxin-like 3 chr2:17728855-17731461 FORWARD LENGTH=691	7.0e-32	60%
RefSeq	Arabidopsis thaliana	NP_565976.1	tetratricopetide-repeat thioredoxin-like 3 [Arabidopsis thaliana]	9.0e-32	60%
RefSeq	Populus trichocarpa	XP_002317465.1	predicted protein [Populus trichocarpa]	9.0e-27	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SIN1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 261 aas, your sequence is shorter than subject: 108 - 691

Fln protein: CAIRLDPSYARAHHRLASLYLNLGQVDNARRQFNLSGQHSDRADIQRLQNVEMHLTKCVEARRTGDWHGVLRESDAAFVAGAESSPQVFASKAEALFAQASKAWRIQ*

Protein Length: 109

Fln nts: AATGTGCAATCAGATTGGATCCTTCCTATGCCCGGGCTCACCACAGACTTGCATCACTCTATCTCAATTTAGGGCAGGTAGATAATGCCAGAAGGCAATTCAATCTATCAGGACAGCATTCAGATAGGGCTGATATTCAGAGGCTGCAGAATGTGGAGATGCATTTAACAAAGTGTGTGGAAGCTCGGAGAACAGGAGATTGGCATGGTGTATTAAGAGAGAGCGATGCAGCATTTGTTGCTGGTGCTGAATCTTCACCGCAGGTATTCGCATCTAAAGCTGAGGCATTATTTGCCCAAGCCAGCAAGGCCTGGAGAATTCAGTGAAGCATTATTACAGCGTCTAGACAGAAAGATGCAGTCTTTATCTGCAAAACCATTACCTTATCATTCACACATTCAGTTCTGAAACACCTATAGACAGCAGAATAAAATGGATTTGATTCATATAGGAAGAGTA

Fln Alignment:

biogeco3_euler_26790___AIRLDPSYARAHHRLASLYLNLGQVDNARRQFNLSGQHSDRADIQRLQNVEMHLTKCVEARRTGDWHGVLRESDAAFVAGAESSPQVFASKAEA
Q9SIN1________________AVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSGQCPDQADLQRLQTLEKHLRRCWEARKIGDWKTAIKETDAAIANGADSSPQLVACKAEA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain