SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208591

Length: 505 nt

UniGene Fasta

>sp_v3.0_unigene208591
GTGGATTATGCTTGTGTTCTCAAGATCAATCCGGAAGTTCCCTTGGATATAGCATGCTTGCTAGGCTGTGGACTGGCCACAGGACTTGGAGCTGTATGGAACATAGCAGACAAGCATCCAGGATAATTGGCATTGACACAAATCCCAACAAGTTTCCTAAAGCCAAAATCCTGGGAGTGACAGACTGCATCAACCCAAAAGACTACGAAAAGCCCATTCAGGAGGTGATAAGAGATATATCAAATTGGCGGTGTGGATTACGGCTTTGAATGCATTGGAAATACAGATATCTTATACCAGTGCTTTCTGGCCACCAATGATGTCTGGGGCTTGACAGTATTGTTGGGATATGATTCGAGTCCAAGAAAGCTAAGCCTTCTTCCAACAGAGTTGTTTATGGGTCGGAGGATTGTGGCATCCATATTTGGTGGATTCAAGGGAAAATCCCAATTGCCTAATCTTATAGAAAAGTGTGCAAGCAAGGAAGTCCAAGTAAAGGAACATT

Ace file of the UniGene sp_v3.0_unigene208591

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alcohol dehydrogenase-like 3 n=2 Tax=Arabidopsis RepID=ADHL3_ARATH	-	-	5.0e-32	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	Gene names
Sma3	AT1G64710; OSJNAa0036D19.15; OSJNBa0050E08.8;

Source	GOs	Term	Type	Identity
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G32780.1	GroES-like zinc-binding dehydrogenase family protein chr1:11869977-11872595 REVERSE LENGTH=394	5.0e-34	55%
RefSeq	Arabidopsis thaliana	NP_564409.1	alcohol dehydrogenase-like 3 [Arabidopsis thaliana]	6.0e-34	55%
RefSeq	Populus trichocarpa	XP_002317673.1	predicted protein, partial [Populus trichocarpa]	2.0e-29	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZ44

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 168 - 405

Fln protein: VDYACVLKINPEVPLDIACLLGCGLATGLGAVWNIADKHPG*LALTQIPTSFLKPKSWE*QTASTQKTTKSPFRR**EIYQIGGVDYGFECIGNTDILYQCFLATNDVWGLTVLLGYDSSPRKLSLLPTELFMGRRIVASIFGGFKGKSQLPNLIEKCASKEVQVKEH

Protein Length: 169

Fln nts: GTGGATTATGCTTGTGTTCTCAAGATCAATCCGGAAGTTCCCTTGGATATAGCATGCTTGCTAGGCTGTGGACTGGCCACAGGACTTGGAGCTGTATGGAACATAGCAGACAAGCATCCAGGATAATTGGCATTGACACAAATCCCAACAAGTTTCCTAAAGCCAAAATCCTGGGAGTGACAGACTGCATCAACCCAAAAGACTACGAAAAGCCCATTCAGGAGGTGATAAGAGATATATCAAATTGGCGGTGTGGATTACGGCTTTGAATGCATTGGAAATACAGATATCTTATACCAGTGCTTTCTGGCCACCAATGATGTCTGGGGCTTGACAGTATTGTTGGGATATGATTCGAGTCCAAGAAAGCTAAGCCTTCTTCCAACAGAGTTGTTTATGGGTCGGAGGATTGTGGCATCCATATTTGGTGGATTCAAGGGAAAATCCCAATTGCCTAATCTTATAGAAAAGTGTGCAAGCAAGGAAGTCCAAGTAAAGGAACATT

Fln Alignment:

biogeco3_euler_10031___VDYACVLKINPEVPLDIXXXXXXXXXXXXXXVWNIADKHPG*--------------------------LALTQIPTSFLKPKSWEXXXXXXXXXXXXPFRR**EIYQIGGVDYGFECIGNTDILYQCFLATNDVWGLTVLLGYDSSPRKLSLLPTELFMGRRIVASIFGGFKGKSQLPNLIEKCASKEVQVKE
A9NZ44________________VDSKCVAKINPETPLDKACLFGCGITTGVGAALYTADIEPGSTVAIFGLGTVGLAVAEGARIRGASKIIGVDTNPNKFIKAKALGVTECINPKDHEKPIQEVITEKSEGGVDYSFECIGNTDVLYQAFLATRPALGLTVLLGVDISPRKISLHPIDLFSGRRIVATTFGGVKGKTQLPYLVEMFMNKEIRVEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain