SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208454

Length: 481 nt

UniGene Fasta

>sp_v3.0_unigene208454
AGGGGAAAGCTTGAATAGAGGGCCCTCCGATCTATCGCAATATTCTTCAGATCCCTGGTCTCGGAGTGAAATCATCTGCTGCAGCCACTGCTGCCAGTGTTTGTTACTGTTAGAATTTGTTATAGCGGACAATGGCTTCAACAGACATAGATATGATTCCCGTGCCCTCTGGCGAGGGTTCCAGCTCTCAAGCCGGACCAAGCGCTTCCACCAAGAAGGCCAAACGTTTCGAAATCAAGAAGTGGAATGCTGTAGCCCTTTGGGCGTGGGATATTGTGGTTGACAATTGTGCAATTTGCAGAAACCACATTATGGACCTCTGCATTGAGTGCCAGGCAAATCAAGCAAGTGCTACCAGTGAAGAATGTGCTGTTGCATGGGGTGGCTGCAATCATGCCTTCCACTTCCATTGCATAAGTCGTTGGCTTAAGACAAGACAAGTCTGCCCATTAGATAATAGCGAGTGGGAGTTCCAGAAGTA

Ace file of the UniGene sp_v3.0_unigene208454

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RING-box protein 1a n=7 Tax=rosids RepID=RBX1A_ARATH	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G20570.2	ROC1, RBX1, HRT1, ATRBX1 RING-box 1 chr5:6956905-6958221 REVERSE LENGTH=142	70%
RefSeq	Arabidopsis thaliana	NP_568396.1	RING-box protein 1 [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002326127.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMC5

Fln msg: STOP codon was not found. Distance to subject end: 2 aas,

Fln protein: MASTDIDMIPVPSGEGSSSQAGPSASTKKAKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECAVAWGGCNHAFHFHCISRWLKTRQVCPLDNSEWEFQK

Protein Length: 117

Fln nts: AGGGGAAAGCTTGAATAGAGGGCCCTCCGATCTATCGCAATATTCTTCAGATCCCTGGTCTCGGAGTGAAATCATCTGCTGCAGCCACTGCTGCCAGTGTTTGTTACTGTTAGAATTTGTTATAGCGGACA_-_ATGGCTTCAACAGACATAGATATGATTCCCGTGCCCTCTGGCGAGGGTTCCAGCTCTCAAGCCGGACCAAGCGCTTCCACCAAGAAGGCCAAACGTTTCGAAATCAAGAAGTGGAATGCTGTAGCCCTTTGGGCGTGGGATATTGTGGTTGACAATTGTGCAATTTGCAGAAACCACATTATGGACCTCTGCATTGAGTGCCAGGCAAATCAAGCAAGTGCTACCAGTGAAGAATGTGCTGTTGCATGGGGTGGCTGCAATCATGCCTTCCACTTCCATTGCATAAGTCGTTGGCTTAAGACAAGACAAGTCTGCCCATTAGATAATAGCGAGTGGGAGTTCCAGAAGTA

Fln Alignment:

biogeco2_euler_2104___MASTDIDMIPVPSGEGSSSQAGPSASTKKAKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECAVAWGGCNHAFHFHCISRWLKTRQVCPLDNSEWEFQK
A9NMC5________________MASTDIDMTPVPSGEGSSAQAGPSTSTKKAKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain