SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208448

Length: 1086 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene208448

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative receptor-like kinase (with alternative splicing) [Oryza sativa Japonica Group] gb\|ABF98430.1\| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed [Oryza sativa Japonica Group] gb\|ABF98431.1\| BRASSINOSTEROID I	-	-	0.0	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	1.732e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	7.803e-06	-
Sma3		EC:2.7.11.3-	-	1.166e-07	-

Source	Gene names
Sma3	AT1G34210; AT1G60800; AT2G13790; AT2G13800; AT2G23950; AT4G30520; AT4g30520; AT5G10290; AT5G16000; AT5G45780; AT5G63710; AT5G65240; At1g34210; At1g60800; At2g13780; At2g13790; At2g13800; At2g23950; At3g25560; At4g30520; At4g33430; At5g10290; At5g16000; At

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	endosome membrane	GO:0010008	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Adenovirus E3 region protein CR2	IPR003470	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G10290.1	leucine-rich repeat transmembrane protein kinase family protein chr5:3235462-3238171 REVERSE LENGTH=613	82%
RefSeq	Arabidopsis thaliana	NP_196591.2	putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002309974.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLV1

Fln msg: Overlapping hits, possible frame ERROR between 273 and 252, your sequence is shorter than subject: 253 - 607

Fln protein: LVYPYMENLSVAYRLRELKPGEKGLDWPTRKQVAFGAARGLEYLHEHCNPRIIHRDLKAANILLDEDYEAVVGDFGLAKLVDAxxxxxxxxxRGTMGHIAPEYLSTGRSSERTDVFGYGITLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLQREKRLDAIVDANLKQNYDAKEVEAMIQVALLCTQTSPEDRPKMTEVVRMLEGEGLDERWEEWQQVEVIRRQEYELMPRRFEWAEDSVYNQDAIELSGGR*

Protein Length: 254

Fln nts: CTTGTGTACCCTTACATGGAGAATCTCAGTGTTGCATATCGACTACGGGAACTCAAACCTGGGGAGAAAGGACTTGACTGGCCTACGCGAAAACAGGTGGCTTTTGGTGCAGCTCGTGGTTTGGAGTACCTTCATGAGCACTGTAATCCAAGGATCATTCACCGTGACCTGAAGGCTGCCAATATTTTGTTAGATGAAGATTACGAAGCAGTTGTTGGTGATTTTGGATTAGCGAAGTTGGTTGATGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxCGTGGAACTATGGGTCATATTGCTCCTGAATACTTATCAACTGGAAGATCCTCAGAGAGGACAGATGTGTTTGGTTATGGTATTACTCTTTTGGAGCTTGTCACTGGACAACGTGCTATAGATTTTTCACGTCTCGAGGAAGAGGATGACGTTCTATTATTGGATCATGTTAAGAAGTTACAAAGAGAGAAAAGATTAGATGCTATTGTAGATGCAAACCTAAAGCAGAACTATGATGCAAAAGAAGTTGAAGCAATGATTCAGGTAGCATTGTTGTGCACACAGACCTCACCAGAAGATCGACCCAAAATGACAGAAGTTGTGCGCATGTTGGAAGGAGAGGGTTTGGATGAACGTTGGGAAGAGTGGCAGCAGGTTGAAGTCATTCGTCGACAAGAATATGAACTGATGCCTCGAAGGTTTGAGTGGGCTGAGGATTCTGTATATAACCAGGATGCAATCGAACTCTCTGGTGGAAGATGATCAACATGGGCTTTGGTGTCTCATATTTTTGTAACTTGGAACACTTTACAGTTTTCTTCAAGTATATCATTATTGGAACTGTAAAAGCGGTTTTTAAGGTCGTCAGATTTTATTTACCTATTCTTTCACTTTTGTATGCAAGGTGTGACTGCTTGTTCGACGGTACTCGAATGCATTTTAAATCCCTGCTTCATCAGTAGGAAATCTCCAATCATACTGTTGTCCATTTGCAATTGTGTACATTAGATATTTACCTAGGTATCCTTGAACATCTGAATACCAGGAAAACCCTGACTTTCATTAACCAGGAAAGATCTGGATTATGATG

Fln Alignment:

biogeco2_euler_1660___LVYPYMENLSVAYRLRELKPGEKGLDWPTRKQVAFGAARGLEYLHEHCNPRIIHRDLKAANILLDEDYEAVVGDFGLAKLVDAKxxxxxxxxxGTMGHIAPEYLSTGRSSERTDVFGYGITLLELVTGQRAIDFSRXXXXXXXXXXXXXXXXQREKRLDAIVDANLKQNYDAKEVEAMIQVALLCTQTSPEDRPKMTEVVRMLEGEGLDERWEEWQQVEVIRRQEYELMPRRFEWAEDSVYNQDAIELSGGR
B8LLV1________________LVYPYMQNLSVAYRLRELKPTEKPLDWPARKNVALGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDARxxxxxxxxxGTMGHIAPEYLSTGRSSERTDVFGYGITLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLQREKRLDAIVDGNLKQNYDAKEVEAMIQVALLCTQTSPEDRPKMTEVVRMLEGEGLDERWEEWQQVEVIRRQEYEMIPRRFEWAEDSIYNQDAIELSGGR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain