SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208419

Length: 213 nt

UniGene Fasta

>sp_v3.0_unigene208419
AAAATCTCACAGGCACTGCTCGCTATGCTAGTATCAATACTCATCTTGGAATAGAGCAAAGTAGGAGAGATGATCTAGAGTCCTTGGGATACATGCTTATGTATTTCTTGAGGGGAAGCCTTCCATGGCAGGGATTGAAAGCGTGGGAACCAAAAAGCAGAAGTATGAAGAAAATAAGTGAAGAAAAAATGTCAACTCCAATTGAGGTGCTGT

Ace file of the UniGene sp_v3.0_unigene208419

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to casein kinase I delta [Strongylocentrotus purpuratus] ref\|XP_001191450.1\| PREDICTED: similar to casein kinase I delta [Strongylocentrotus purpuratus]	-	-	3.0e-25	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Putative casein kinase I	-	-	7.054e-19	-

Source	Gene names
Sma3	ADK1; AT4g08800; AT4g14340; AT4g28540; AT4g28860; AT4g28880; At1g03930; At1g04440; At1g72710; At1g72710/F28P22.10; At2g19470; At3g23340; At4g08800; At4g14340; At4g26100; At4g28540; At4g28860; At4g28880; At4g28880/F16A16_10; At5g43320; At5g44100; At5g57015

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plasmodesma	GO:0009506	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Domain of unknown function DUF71, ATP-binding domain	IPR002761	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	YjgF/Yer057p/UK114 family	IPR006175	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Endoribonuclease L-PSP/chorismate mutase-like	IPR013813	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G23340.1	ckl10 casein kinase I-like 10 chr3:8351047-8353791 FORWARD LENGTH=442	2.0e-31	80%
RefSeq	Arabidopsis thaliana	NP_188976.1	casein kinase 1 [Arabidopsis thaliana]	2.0e-31	80%
RefSeq	Populus trichocarpa	XP_002302034.1	predicted protein [Populus trichocarpa]	1.0e-31	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR36

Fln msg: Distance to subject end: 239 aas, your sequence is shorter than subject: 70 - 479

Fln protein: NLTGTARYASINTHLGIEQSRRDDLESLGYMLMYFLRGSLPWQGLKAWEPKSRSMKKISEEKMSTPIEVL

Protein Length: 71

Fln nts: AAAATCTCACAGGCACTGCTCGCTATGCTAGTATCAATACTCATCTTGGAATAGAGCAAAGTAGGAGAGATGATCTAGAGTCCTTGGGATACATGCTTATGTATTTCTTGAGGGGAAGCCTTCCATGGCAGGGATTGAAAGCGTGGGAACCAAAAAGCAGAAGTATGAAGAAAATAAGTGAAGAAAAAATGTCAACTCCAATTGAGGTGCTGT

Fln Alignment:

biogeco2_euler_14819___NLTGTARYASINTHLGIEQSRRDDLESLGYMLMYFLRGSLPWQGLKAWEPKSRSMKKISEEKMSTPIEVL
B8LR36________________NLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKA-GTKKQKYDKISEKKVSTPFEVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain