SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208401

Length: 244 nt

UniGene Fasta

>sp_v3.0_unigene208401
TGTCCAACTCTGGTAAAGCACTGGAGCAGACAGGAAAGAAGCAGTATGTGAAACAGGTTACTGGAAGGTATAATGATACTGATCTACATTTGGCAGCCAAGAAGGGAGATTTAGAGGCTGTGAAGAAGCTTTTAGATGGGTTACATTCCCAAAACAGTGTACAGAACCCTCAGGCTGATATAGAAATGGGGGAGATTCGATCATGTTTGGTAGATGAAGAAAATGAGCTTGCTGAGACACCATT

Ace file of the UniGene sp_v3.0_unigene208401

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ankyrin repeats-containing protein [Arabidopsis thaliana] sp\|Q9C7A2.1\|Y3236_ARATH RecName: Full=Ankyrin repeat-containing protein At3g12360 gb\|AAG51002.1\|AC069474_1 ankyrin-like protein; 93648-91299 [Arabidopsis thaliana] gb\|AEE75188.1\| ankyrin repeats-co	-	-	2.0e-17	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Ankyrin repeat-containing protein, putative	-	-	9.712e-07	-

Source	Gene names
Sma3	At3g12360; GSVIVT00029517001; LOC_Os03g17240; MQC3.17; Os03g0281000; OsI_11031; OsJ_10369; POPTRDRAFT_563828; RCOM_0441690; RCOM_0626240; T2E22.31; VITISV_005609;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ankyrin repeat	IPR002110	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G12360.1	ITN1 Ankyrin repeat family protein chr3:3934146-3936495 FORWARD LENGTH=590	1.0e-22	55%
RefSeq	Arabidopsis thaliana	NP_187842.1	ankyrin repeats-containing protein [Arabidopsis thaliana]	2.0e-22	55%
RefSeq	Populus trichocarpa	XP_002312060.1	predicted protein [Populus trichocarpa]	5.0e-21	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL37

Fln msg: Distance to subject end: 460 aas, your sequence is shorter than subject: 80 - 584

Fln protein: SNSGKALEQTGKKQYVKQVTGRYNDTDLHLAAKKGDLEAVKKLLDGLHSQNSVQNPQADIEMGEIRSCLVDEENELAETP

Protein Length: 81

Fln nts: TGTCCAACTCTGGTAAAGCACTGGAGCAGACAGGAAAGAAGCAGTATGTGAAACAGGTTACTGGAAGGTATAATGATACTGATCTACATTTGGCAGCCAAGAAGGGAGATTTAGAGGCTGTGAAGAAGCTTTTAGATGGGTTACATTCCCAAAACAGTGTACAGAACCCTCAGGCTGATATAGAAATGGGGGAGATTCGATCATGTTTGGTAGATGAAGAAAATGAGCTTGCTGAGACACCATT

Fln Alignment:

biogeco2_euler_1410___SNSGKALEQTGKKQYVKQVTGRYNDTDLHLAAKKGDLEAVKKLLDGLHSQNSVQNPQADIEMGEIRSCLVDEENELAETP
B8LL37________________SNSGKALEQTGKKQYVKQVTGRYNDTDLHLAAKKGDLEAVKKILDGLHSENGVQNPQADIEMGEIRSCLVDEENELFETP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain