SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208396

Length: 350 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene208396
GTTAGATATAATTTGTATTATTGTGGTTTGCTTCAGCCTTCATGTAACTCATAATTCATTACACTCCTATGTTTTTTGCAGCACAATGGTGGGAGGCCTTTGGTGGCCAGTTCCCTGAATTGCAAAGGTTTGCAATTCGTATTTTGAGTCAAACTTGCAGTGCATCTGGGTGTGAGCGCAATTGGTCTGTCTATGAGAGGATTCACACAAAGAAGAGACACCGTTTGGATCAAAAACGGTTAAATGATCTAGTTTATGTCCAATGCAACCTTCGGCTCAGACGAAACCATTTGCTGAACAAAAGACCTGATTCAGATCCCATTGTGTTGGAAGACATTGATCCAACATCA

Ace file of the UniGene sp_v3.0_unigene208396 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dimer_Tnp_hAT domain containing protein	-	-	2.0e-10	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	HAT family dimerisation domain containing protein	-	-	2.122e-07	-

Source	Gene names
Sma3	At5g33406; B1007D10.5; GSVIVT00000858001; GSVIVT00001200001; GSVIVT00002028001; GSVIVT00002113001; GSVIVT00002236001; GSVIVT00002367001; GSVIVT00005187001; GSVIVT00006112001; GSVIVT00006487001; GSVIVT00007208001; GSVIVT00007669001; GSVIVT00010659001; GSVI

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Histidine triad motif	IPR011151	-	-
Sma3		IPR011523	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G33406.1	hAT dimerisation domain-containing protein / transposase-related chr5:12676126-12678403 REVERSE LENGTH=509	1.0e-22	48%
RefSeq	Arabidopsis thaliana	NP_680299.4	hAT family dimerization domain-containing protein [Arabidopsis thaliana]	1.0e-22	48%
RefSeq	Populus trichocarpa	XP_002318364.1	predicted protein [Populus trichocarpa]	1.0e-18	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADK7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 86 aas, your sequence is shorter than subject: 116 - 250

Fln protein: *I*FVLLWFASAFM*LIIHYTPMFFAAQWWEAFGGQFPELQRFAIRILSQTCSASGCERNWSVYERIHTKKRHRLDQKRLNDLVYVQCNLRLRRNHLLNKRPDSDPIVLEDIDPTS

Protein Length: 117

Fln nts: GTTAGATATAATTTGTATTATTGTGGTTTGCTTCAGCCTTCATGTAACTCATAATTCATTACACTCCTATGTTTTTTGCAGCACAATGGTGGGAGGCCTTTGGTGGCCAGTTCCCTGAATTGCAAAGGTTTGCAATTCGTATTTTGAGTCAAACTTGCAGTGCATCTGGGTGTGAGCGCAATTGGTCTGTCTATGAGAGGATTCACACAAAGAAGAGACACCGTTTGGATCAAAAACGGTTAAATGATCTAGTTTATGTCCAATGCAACCTTCGGCTCAGACGAAACCATTTGCTGAACAAAAGACCTGATTCAGATCCCATTGTGTTGGAAGACATTGATCCAACATCA

Fln Alignment:

biogeco2_euler_5564___AQWWEAFGGQFPELQRFAIRILSQTCSASGCERNWSVYERIHTKKRHRLDQKRLNDLVYVQCXXXXXXXXXXXXRPDSDPIVLEDIDPTS
D5ADK7________________AYWWQQFGSQCHELHKFAVRILSQTCSAFGCERNWSVFERIHTKKRNRLEQKRLNDIVFVQCNLRLRRNQLMNKTPESNNIFLDDIDPSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain