SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208288

Length: 269 nt

UniGene Fasta

>sp_v3.0_unigene208288
TAAATTAGATGCACTTGTAACACTTGATGGTAGCATCATGGGTATTTTAGCCATTGCAGGGTATCCTGGTATCACTGTACCTGCTGGATATGATAAATTAGGTGTTCCATTTGGCTTATATTTTGGAGGGGAGAGAGGTTCAGAAGCAACTCTTGTTGAGATTTCTTATGCTTTTGAACATGCAACCAAAATAAGGAAAATTCCTCATGTATAGAATATAAAATAGCTTGCTATCTATGTAAGCTAAAAGAATGCATAAGCATCATCCT

Ace file of the UniGene sp_v3.0_unigene208288

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Amidase family protein [Solanum demissum]	-	-	9.0e-18	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Amidase, putative	-	-	3.742e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Amidase.	EC:3.5.1.4	-	1.741e-10	-

Source	KEGGs	Term	e value	Identity
Sma3	Arginine and proline metabolism	00330	1.741e-10	%
Sma3	Phenylalanine metabolism	00360	1.741e-10	%
Sma3	Tryptophan metabolism	00380	1.741e-10	%
Sma3	Cyanoamino acid metabolism	00460	1.741e-10	%
Sma3	Aminobenzoate degradation	00627	1.741e-10	%
Sma3	Styrene degradation	00643	1.741e-10	%
Sma3	Biosynthesis of plant hormones	01070	1.741e-10	%

Source	Gene names
Sma3	26.t00037; AT4g34880; At4g34880; GSVIVT00036075001; GSVIVT00036076001; GSVIVT00036077001; GSVIVT00036078001; GSVIVT00036081001; GSVIVT00036082001; LOC_Os10g06710; OSIGBa0140C02.5; OSIGBa0140C02.6; OSIGBa0148J22.1; OSJNAa0034B05.13; OSJNBa0004E08.9; OSJNBb

Source	GOs	Term	Type	e value	Identity
Sma3	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	GO:0016884	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Amidase	IPR000120	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Plant specific eukaryotic initiation factor 4B	IPR010433	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G34880.1	Amidase family protein chr4:16615549-16617424 FORWARD LENGTH=466	7.0e-22	63%
RefSeq	Arabidopsis thaliana	NP_195214.1	Amidase family protein [Arabidopsis thaliana]	9.0e-22	63%
RefSeq	Populus trichocarpa	XP_002305493.1	predicted protein [Populus trichocarpa]	8.0e-22	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7X4

Fln msg: your sequence is shorter than subject: 71 - 529

Fln protein: KLDALVTLDGSIMGILAIAGYPGITVPAGYDKLGVPFGLYFGGERGSEATLVEISYAFEHATKIRKIPHV*

Protein Length: 72

Fln nts: TAAATTAGATGCACTTGTAACACTTGATGGTAGCATCATGGGTATTTTAGCCATTGCAGGGTATCCTGGTATCACTGTACCTGCTGGATATGATAAATTAGGTGTTCCATTTGGCTTATATTTTGGAGGGGAGAGAGGTTCAGAAGCAACTCTTGTTGAGATTTCTTATGCTTTTGAACATGCAACCAAAATAAGGAAAATTCCTCATGTATAG___AATATAAAATAGCTTGCTATCTATGTAAGCTAAAAGAATGCATAAGCATCATCCT

Fln Alignment:

biogeco2_euler_2507___KLDALVTLDGS--IMGILAIAGYPGITVPAGYDKLGVPFGLYFGGERGSEATLVEISYAFEHATKIRKIP
D5A7X4________________KLDALVAPGNNFNIVSLLAIAGYPGIIVPAGYDKSGVPFGICFGGGRGSEPTLIKISYDFEHATKIRKIP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain