SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208286

Length: 285 nt

UniGene Fasta

>sp_v3.0_unigene208286
GCTCATGCAAAACTGAGTAATCTCGGTGCCAAGTTTGATCCTGTTGATGGATTTTCCATTGCGGATGCTCCTCAAACACCAGCACCAGAGAAGTTTGTAGCTGCCAAGTACTCTTATGGTGCAACTGAAGACAAGAAGGAACTGTCTGAGGCCATGAAGGCAAAAATGCGAGCTGAATACCTAGCGTTTGGGGGGAAGCCCGAATAAGCCTCTTCAGTCTAATTACTTTCTCAACATCATCATTTTTGTCGCTGTTGTTAGCTAGTTTTGGCATCCTTCTTTGGA

Ace file of the UniGene sp_v3.0_unigene208286

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chloroplast thylakoid-bound ascorbate peroxidase n=2 Tax=Vigna unguiculata RepID=Q5QHW7_VIGUN	-	-	4.0e-19	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Thylakoid-bound ascorbate peroxidase	-	-	9.515e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	L-ascorbate peroxidase.	EC:1.11.1.11	-	3.014e-14	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		3.014e-14	%
Sma3	Glutathione metabolism	00480		3.014e-14	%

Source	Gene names
Sma3	APX2; APX6; APXT; At1g77490; BO-tbAPX; GSVIVT00015409001; POD10; POPTRDRAFT_209946; T5M16.8; sapx;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stromal thylakoid	GO:0009533	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	L-ascorbate peroxidase activity	GO:0016688	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Plant ascorbate peroxidase	IPR002207	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G77490.1	TAPX thylakoidal ascorbate peroxidase chr1:29117688-29120046 FORWARD LENGTH=426	5.0e-21	63%
RefSeq	Arabidopsis thaliana	NP_177873.1	L-ascorbate peroxidase [Arabidopsis thaliana]	6.0e-21	63%
RefSeq	Populus trichocarpa	XP_002307442.1	predicted protein, partial [Populus trichocarpa]	1.0e-16	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXJ7

Fln msg: Overlapping hits, possible frame ERROR between 201 and 191, your sequence is shorter than subject: 89 - 394

Fln protein: AHAKLSNLGAKFDPVDGFSIADAPQTPAPEKFVAAKYSYGATEDKKELSEAMKAKMRAEYLAFxxxxxNKPLQSNYFLNIIIFVAVVS*

Protein Length: 90

Fln nts: GCTCATGCAAAACTGAGTAATCTCGGTGCCAAGTTTGATCCTGTTGATGGATTTTCCATTGCGGATGCTCCTCAAACACCAGCACCAGAGAAGTTTGTAGCTGCCAAGTACTCTTATGGTGCAACTGAAGACAAGAAGGAACTGTCTGAGGCCATGAAGGCAAAAATGCGAGCTGAATACCTAGCGTTTxxxxxxxxxxxxxxxAATAAGCCTCTTCAGTCTAATTACTTTCTCAACATCATCATTTTTGTCGCTGTTGTTAGCTAGTTTTGGCATCCTTCTTTGGA

Fln Alignment:

biogeco2_euler_8810___AHAKLSNLGAKFDPVDGFSIADAPQTPAPEKFVAAKYSYGATEDKKELSEAMKAKMRAEYLAFxxxxNKPLQSNYFLNIIIFVAVVS
A9NXJ7________________AHAKLSNLGAKFDPVDGFSIADAPQTPIPEKFVAAKYSYGASEDKKELSETMKAKMRAEYLAFxxxxNKPLQSNYFLNIIIFVAVLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain