UniGene Name: sp_v3.0_unigene208166
Length: 123 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
UniGene Fasta (sense) |
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>sp_v3.0_unigene208166
G |
Ace file of the UniGene sp_v3.0_unigene208166 (antisense) |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | ORF MSV144 putative ubiquitin, similar to Neurospora crassa GB:U01220 n=1 Tax=Melanoplus sanguinipes entomopoxvirus RepID=Q9YVU8_MSEPV | - | - | 1.0e-11 | 91% |
FL-Next | tr=Polyubiquitin; Pinus sylvestris (Scots pine). | - | - | 0.0 | 100% |
Source | Gene names |
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Sma3 | AT5G03240; At1g55060; At2g36170; At4g02890; At4g05050; At4g05320; At5g03240; At5g20620; At5g37640; B1472F02.6; CHLREDRAFT_140045; CHLREDRAFT_195594; EgUbi; FUBI1; GSVIVT00037199001; GUbB1; GUbB2; H0303G06.8; LOC_Os03g13170; LpUBQ; MICPUCDRAFT_17541; MICPU |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | cell wall | GO:0005618 | Cellular Component | 0.0 | - |
Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | nucleolus | GO:0005730 | Cellular Component | 0.0 | - |
Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
Sma3 | ribosome | GO:0005840 | Cellular Component | 0.0 | - |
Sma3 | cytoskeleton | GO:0005856 | Cellular Component | 0.0 | - |
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | structural constituent of ribosome | GO:0003735 | Molecular Function | 0.0 | - |
Sma3 | superoxide dismutase activity | GO:0004784 | Molecular Function | 0.0 | - |
Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
Sma3 | nickel cation binding | GO:0016151 | Molecular Function | 0.0 | - |
Sma3 | antioxidant activity | GO:0016209 | Molecular Function | 0.0 | - |
Sma3 | translation | GO:0006412 | Biological Process | 0.0 | - |
Sma3 | translational elongation | GO:0006414 | Biological Process | 0.0 | - |
Sma3 | protein modification process | GO:0006464 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Ubiquitin | IPR000626 | - | 0.0 | - |
Sma3 | Ribosomal protein 60S | IPR001813 | - | 0.0 | - |
Sma3 | Ribosomal protein L40e | IPR001975 | - | 0.0 | - |
Sma3 | Ribosomal protein S27a | IPR002906 | - | 0.0 | - |
Sma3 | Actin-like | IPR004000 | - | 0.0 | - |
Sma3 | Actin, conserved site | IPR004001 | - | 0.0 | - |
Sma3 | Superoxide dismutase, Nickel-type | IPR014123 | - | 0.0 | - |
Sma3 | Isocitrate lyase/phosphorylmutase, conserved site | IPR018523 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT4G05320.2 | UBQ10 polyubiquitin 10 chr4:2718559-2719932 FORWARD LENGTH=457 | 9.0e-14 | 100% |
RefSeq | Arabidopsis thaliana | NP_849301.4 | polyubiquitin 10 [Arabidopsis thaliana] | 1.0e-13 | 100% |
RefSeq | Populus trichocarpa | XP_002299930.1 | predicted protein [Populus trichocarpa] | 1.0e-13 | 100% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: Q41067
Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 20 aas, your sequence is shorter than subject: 41 - 761
Fln protein:
G
Protein Length:
42
Fln nts:
G
Fln Alignment:
biogeco1_euler_2035___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Q41067________________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain