SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208135

Length: 143 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene208135
GACTGGCGAGGTGGCAGAGGAGCTGGTTTCAACATTATCCCTAGCAGTACAGGAGCAGCTAAGGCTGTTGGCAAGGTTGCCTTCCGAGTACCCACACCAGATGTTTCAGTTGTTGATTTGACTGTTAGACTTGAGAAGTCTGC

Ace file of the UniGene sp_v3.0_unigene208135 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glyceraldehyde-3-phosphate dehydrogenase, cytosolic n=4 Tax=Spermatophyta RepID=G3PC_GINBI	-	-	6.0e-16	80%
FL-Next	sp=Glyceraldehyde-3-phosphate dehydrogenase, cytosolic; Pinus sylvestris (Scots pine).	-	-	0.0	81%
Sma3	Glyceraldehyde-3-phosphate dehydrogenase	-	-	1.107e-30	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating).	EC:1.2.1.12	-	1.523e-27	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	1.523e-27	%
Sma3	Biosynthesis of phenylpropanoids	01061	1.523e-27	%
Sma3	Biosynthesis of terpenoids and steroids	01062	1.523e-27	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	1.523e-27	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	1.523e-27	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	1.523e-27	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	1.523e-27	%
Sma3	Biosynthesis of plant hormones	01070	1.523e-27	%
Sma3	Metabolic pathways	01100	1.523e-27	%
Sma3	Biosynthesis of secondary metabolites	01110	1.523e-27	%

Source	Gene names
Sma3	G3PDH; G3pdh; GAPC; GAPC1; GAPC3; GAPDH; GAPDH2; GAPDH_1; GPC3; GSVIVT00009717001; GSVIVT00035097001; GapC; GapCp; GapCp1; MICPUCDRAFT_27359; MICPUN_104954; NaGAPDH; OJ000223_09.15; OJ1791_B03.34; Os02g0601300; Os04g0486600; Os06g0666600; OsI_07948; OsJ_0

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	GO:0004365	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	glucose metabolic process	GO:0006006	Biological Process	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Glyceraldehyde-3-phosphate dehydrogenase, type I	IPR006424	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	CS domain	IPR017447	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G04120.1	GAPC, GAPC-1, GAPC1 glyceraldehyde-3-phosphate dehydrogenase C subunit 1 chr3:1081077-1083131 FORWARD LENGTH=338	5.0e-19	72%
RefSeq	Arabidopsis thaliana	NP_001077530.1	glyceraldehyde 3-phosphate dehydrogenase [Arabidopsis thaliana]	5.0e-19	72%
RefSeq	Populus trichocarpa	XP_002321679.1	predicted protein [Populus trichocarpa]	9.0e-20	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: P34924

Fln msg: Distance to subject end: 82 aas, your sequence is shorter than subject: 47 - 340

Fln protein: DWRGGRGAGFNIIPSSTGAAKAVGKVAFRVPTPDVSVVDLTVRLEKS

Protein Length: 48

Fln nts: GACTGGCGAGGTGGCAGAGGAGCTGGTTTCAACATTATCCCTAGCAGTACAGGAGCAGCTAAGGCTGTTGGCAAGGTTGCCTTCCGAGTACCCACACCAGATGTTTCAGTTGTTGATTTGACTGTTAGACTTGAGAAGTCTGC

Fln Alignment:

biogeco1_euler_22366___DWRGGRGAGFNIIPSSTGAAKAVGKV-----------AFRVPTPDVSVVDLTVRLEKS
P34924________________DWRGGRGAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain