UniGene Name: sp_v3.0_unigene208031
Length: 238 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
UniGene Fasta (sense) |
---|
>sp_v3.0_unigene208031
T |
Ace file of the UniGene sp_v3.0_unigene208031 (antisense) |
---|
If you push the Download ace button, you will download an ace file of this UniGene.
To watch this ACE file you will need an ACE viewer program as Tablet:
Go to the Tablet ACE viewer Web
Annotations |
---|
Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | MSI type nucleosome/chromatin assembly factor C, putative n=2 Tax=Oryza sativa Japonica Group RepID=Q6ASS7_ORYSJ | - | - | 2.0e-22 | 79% |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 79% |
Sma3 | Nucleosome/chromatin assembly factor group | - | - | 2.08e-09 | - |
Source | Gene names |
---|---|
Sma3 | At2g16780; At4g35050; At5g58230; B1274F11.21; B1394A07.14; CHLREDRAFT_131412; GSVIVT00030810001; GSVIVT00036121001; LOC_Os03g43890; M4E13.110; MCK7.10; MICPUCDRAFT_49651; MICPUN_86547; MSI1; MSI2; MSI3; NFC1501; NFC901; NFC902; NFC903; NFC904; NURF-55; OS |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
Sma3 | chromatin remodeling complex | GO:0016585 | Cellular Component | 0.0 | - |
Sma3 | CUL4 RING ubiquitin ligase complex | GO:0080008 | Cellular Component | 0.0 | - |
Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
Sma3 | DNA replication | GO:0006260 | Biological Process | 0.0 | - |
Sma3 | regulation of gene expression by genetic imprinting | GO:0006349 | Biological Process | 0.0 | - |
Sma3 | regulation of transcription, DNA-dependent | GO:0006355 | Biological Process | 0.0 | - |
Sma3 | cell proliferation | GO:0008283 | Biological Process | 0.0 | - |
Sma3 | pollen development | GO:0009555 | Biological Process | 0.0 | - |
Sma3 | embryo development ending in seed dormancy | GO:0009793 | Biological Process | 0.0 | - |
Sma3 | regulation of flower development | GO:0009909 | Biological Process | 0.0 | - |
Sma3 | trichome differentiation | GO:0010026 | Biological Process | 0.0 | - |
Sma3 | seed coat development | GO:0010214 | Biological Process | 0.0 | - |
Sma3 | chromatin modification | GO:0016568 | Biological Process | 0.0 | - |
Sma3 | heterochromatin assembly | GO:0031507 | Biological Process | 0.0 | - |
Sma3 | positive regulation of cell cycle | GO:0045787 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | WD40 repeat | IPR001680 | - | 0.0 | - |
Sma3 | Phosphopantetheine attachment site | IPR006162 | - | 0.0 | - |
Sma3 | WD40/YVTN repeat-like-containing domain | IPR015943 | - | 0.0 | - |
Sma3 | WD40-repeat-containing domain | IPR017986 | - | 0.0 | - |
Sma3 | WD40 repeat, conserved site | IPR019775 | - | 0.0 | - |
Sma3 | IPR019782 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT5G58230.1 | MSI1, MEE70, ATMSI1 Transducin/WD40 repeat-like superfamily protein chr5:23556112-23557994 FORWARD LENGTH=424 | 1.0e-28 | 77% |
RefSeq | Arabidopsis thaliana | NP_200631.1 | histone-binding protein RBBP4 [Arabidopsis thaliana] | 1.0e-28 | 77% |
RefSeq | Populus trichocarpa | XP_002320581.1 | nucleosome/chromatin assembly factor group [Populus trichocarpa] | 2.0e-28 | 77% |
Full-Lengther Next Prediction |
---|
Fln status: C-terminus
Fln database: coniferopsida.fasta
Fln subject: B8LS29
Fln msg: your sequence is shorter than subject: 61 - 421
Fln protein:
A
Protein Length:
62
Fln nts:
T
Fln Alignment:
biogeco1_euler_15955___AEEAPPELLFIHGGHTSKISDFSWNPAEEWVIASVAEDNILQVWQMSEHIYNDDNASP
B8LS29________________AEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEEDMP
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain