SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene207983

Length: 291 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene207983
GCCACACTATGGGTACTGGAAAAGAGGCTTAGGCAAAGTTCTCCTTTCTGTATAACATTTGGAAGTCCACTAGTGGGGGATGTAGGACTTGTTGAAGCAGTTGGCCGTGAAAATTGGACAGGCAACTTTTGTCATGTGGTTTCCAAGCATGATATTGTTCCTCGAATGCTCCTTGCAACTTTTGAGTCAATCGCTGAACCCTTGATTGCTATCCTGCCCTACTGGCAAGGCATAATGACTAATGACAGTAAAACTGTACCTGATTCTTCTATTCAAGATGCTTGTAAGACT

Ace file of the UniGene sp_v3.0_unigene207983 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipase, putative [Oryza sativa Japonica Group] gb\|ABA91873.1\| Lipase family protein, expressed [Oryza sativa Japonica Group]	-	-	2.0e-10	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Putative uncharacterized protein	-	-	1.78e-06	-

Source	GOs	Term	Type	e value	Identity
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G48090.1	EDS1, ATEDS1 alpha/beta-Hydrolases superfamily protein chr3:17755553-17757692 REVERSE LENGTH=623	3.0e-13	45%
RefSeq	Arabidopsis thaliana	NP_001030829.1	enhanced disease susceptibility 1 protein [Arabidopsis thaliana]	3.0e-13	45%
RefSeq	Populus trichocarpa	XP_002307051.1	PAD4 [Populus trichocarpa]	3.0e-17	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLQ6

Fln msg: Distance to subject end: 382 aas, your sequence is shorter than subject: 97 - 625

Fln protein: ATLWVLEKRLRQSSPFCITFGSPLVGDVGLVEAVGRENWTGNFCHVVSKHDIVPRMLLATFESIAEPLIAILPYWQGIMTNDSKTVPDSSIQDACKT

Protein Length: 98

Fln nts: GCCACACTATGGGTACTGGAAAAGAGGCTTAGGCAAAGTTCTCCTTTCTGTATAACATTTGGAAGTCCACTAGTGGGGGATGTAGGACTTGTTGAAGCAGTTGGCCGTGAAAATTGGACAGGCAACTTTTGTCATGTGGTTTCCAAGCATGATATTGTTCCTCGAATGCTCCTTGCAACTTTTGAGTCAATCGCTGAACCCTTGATTGCTATCCTGCCCTACTGGCAAGGCATAATGACTAATGACAGTAAAACTGTACCTGATTCTTCTATTCAAGATGCTTGTAAGACT

Fln Alignment:

biogeco1_euler_26630___ATLWVLEKRLRQSSPFCITFGSPLVGDVGLVEAVGRENWTGNFCHVVSKHDIVPRMLLATFESIAEPLIAILPYWQGIMTNDSKTVPDSSIQDACKT
B8LLQ6________________ATLWVLEKRLRQSSPFCITFGCPLMGDVGLVEAVGRENWSGNFCHVVSQHDIVPRMLLAPFESIAEPLIAILPYWQGIMANDSVTVPDSVIQVACRT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain