SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene207707

Length: 847 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene207707 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9SW60_RICCO	-	-	6.0e-24	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLS6

Fln msg: Overlapping hits, possible frame ERROR between 750 and 747, Distance to subject end: 132 aas, your sequence is shorter than subject: 282 - 552

Fln protein: DTPRYNETIFVSSGRVLYICLIRTSASDDPFISAIELRTLRPGMYGAAKPGTMLISLWRYDVGGNSTVRFPVDKFDRIWKYSSDLIVSNSISLRFVSCDETISTNNTKELPPPAVMQTAAVIMDDGFKFTVGPTNGHKLLLLLYSAEIEKLNMSEHRSFSVRINGGNRSEAITALSNYSTLERTFISNQAEDFNFALVSTSDATSGPIINAFETYKIVDTQPATYAQDHKALEAIKSRFGVKDWISDPxxxIQWNGIVCESSTYPIRISEIDLSGKNLTGLV

Protein Length: 283

Fln nts: GACACACCACGTTATAATGAAACAATATTTGTTAGTTCTGGCAGAGTCCTGTACATTTGCTTGATCCGAACCTCGGCGTCCGATGATCCCTTTATCTCTGCTATCGAATTGAGGACGCTCCGTCCAGGCATGTATGGAGCGGCTAAGCCAGGAACAATGTTGATATCGCTATGGAGATATGATGTTGGCGGAAATTCTACTGTTAGGTTTCCTGTAGACAAGTTCGACCGGATCTGGAAATATAGCTCAGATTTGATTGTTTCTAATTCTATTTCTCTACGGTTTGTAAGTTGTGATGAGACCATTTCAACCAACAATACCAAGGAACTTCCTCCACCGGCTGTGATGCAAACGGCGGCAGTTATCATGGATGATGGTTTTAAATTCACTGTAGGACCGACCAATGGTCACAAATTATTACTGTTGTTATATTCTGCAGAGATCGAGAAGCTAAATATGTCTGAACACAGATCCTTTTCCGTGAGAATAAATGGTGGAAATCGGTCTGAAGCCATTACTGCTCTGAGCAATTATTCTACCCTGGAGCGAACATTCATATCCAACCAAGCAGAGGACTTCAACTTTGCCTTGGTGAGCACTAGTGACGCTACCAGTGGTCCTATCATCAACGCTTTTGAGACTTACAAAATAGTTGACACCCAACCGGCAACATATGCGCAAGATCACAAAGCTCTTGAGGCTATCAAAAGCAGGTTTGGCGTAAAAGATTGGATTTCTGATCCTxxxxxxxxxATCCAGTGGAATGGAATTGTGTGTGAAAGCAGCACTTACCCCATAAGAATTTCGGAAATTGATTTGTCAGGAAAGAATCTTACAGGATTGGTGCC

Fln Alignment:

biogeco1_euler_8619___YNETIFVSSGRVLYICLIRTSASDDPFISAIELRTLRPGMY--GAAKPGTMLISLWRYDVGGNSTVRFPVDKFDRIWKYSSDLIVSNSISLRFVSCDETISTNNTKELPPPAVMQTAAVIMDDGFKFTVGPTNGHKLLLLLYSAEIEKLNMSEHRSFSVRINGGNRSEAITALSNYSTLERTFISNQAEDFNFALVSTSDATSGPIINAFETYKIVDTQPATYAQDHKALEAIKSRFGVKDWISDPCxLIQWNGIVCESSTYPIRISEIDLSGKNLTGLV
B8LLS6________________YYEFIFVTSGRVLYICLVRTFSSYDPFISAIELRRLQDGMYQNNIGEGGRILVLQSRYDVGGNSVVRYPQDKFDRIWTP-----FKSSGPSRNVSSKEPISTTNTENLPPTAVMQTASVTLSETQPFLLDSTFDSAILLVLYFAEIETLNMSESRSFHVQLDGVQHS-TITLMRNYSALEVT-ISPDTEIGRVELVESTNSTLPPIINAYEYYWEINSGRPTLSDDIYILNDIKGRFHIKDWISDPCxLIPWNGISCDDITGDIRISEIDLSGRKLTGLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain