SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene207697

Length: 1053 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene207697

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ef-hand calcium binding protein, putative n=1 Tax=Ricinus communis RepID=B9T7A1_RICCO	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Ef-hand calcium binding protein, putative	-	-	8.261e-09	-

Source	Gene names
Sma3	At3g10300; At5g04170; CML49; CML50; F14P13.10; F21E1.90; GSVIVT00025653001; GSVIVT00037348001; LOC_Os11g04480; LOC_Os12g04240; OJ1150_A11.32; Os08g0558100; Os11g0140600; Os12g0137100; OsI_30254; OsI_35043; OsI_37406; OsJ_28265; OsJ_32908; OsJ_35159; P0562

Source	GOs	Term	Type	e value	Identity
Sma3	calcium ion binding	GO:0005509	Molecular Function	0.0	-
Sma3	peptidase activity	GO:0008233	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G04170.1	Calcium-binding EF-hand family protein chr5:1145579-1147519 FORWARD LENGTH=354	71%
RefSeq	Arabidopsis thaliana	NP_196037.2	putative calcium-binding protein CML50 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002322657.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNQ9

Fln msg: Warning!, your query overlaps and the subject is separated,

Fln protein: MSGYPNPPYGASAPPPNHYGAPPPNQYGQPPPNQYGQNAYGQKPHPPAPGGQQPYGYPPQPHGTPYAYPPAQPAFAPGTDPEIIRSFQMCDQDGSGFIDDKELQRALSSANQSFSIRTVHLLMFEFTRNNSMKIGPQEFTSLWHSLQAWRAIFERFDRDRSGKIESMELRDALxxILQILVSKYDKTGQSRGIDYDNFIECSLVVKGLTDKFKEKDKSYVGSATLTYEEYMQIVLPFIVA*

Protein Length: 242

Fln nts: CTGCACGGATCGTAGCTCCAAATATAACCCACAGCCCACTCCCGGACCTAGGCACCGAATTCTTCTCTTTGTAGCTACTCCCTCACCG_-_ATGTCGGGATACCCAAATCCTCCCTATGGAGCTTCAGCTCCTCCTCCGAACCACTATGGCGCCCCTCCCCCTAACCAATACGGGCAGCCTCCCCCTAACCAGTATGGGCAGAACGCTTATGGCCAGAAGCCTCACCCTCCTGCTCCTGGAGGGCAACAGCCCTACGGCTACCCGCCTCAACCTCATGGAACTCCTTACGCATACCCTCCTGCACAGCCAGCATTTGCACCAGGTACTGACCCAGAAATCATAAGGTCTTTTCAGATGTGTGATCAAGATGGGAGCGGATTCATAGATGACAAAGAGTTGCAGAGGGCTTTGTCTTCTGCCAACCAATCATTCAGCATCCGGACAGTTCATCTCCTCATGTTCGAGTTCACCAGAAATAATTCCATGAAAATAGGGCCGCAGGAATTTACATCATTGTGGCACAGTCTCCAAGCGTGGCGGGCAATCTTTGAGAGGTTTGACAGAGATCGTAGTGGGAAGATTGAATCGATGGAATTGAGAGATGCGCTTxxxxxxATTTTGCAAATTCTGGTTTCAAAATATGACAAGACAGGCCAATCCAGGGGAATTGATTATGATAACTTCATAGAGTGCAGCCTTGTTGTTAAGGGACTTACTGATAAGTTCAAGGAGAAAGACAAGAGTTATGTTGGCTCAGCCACTTTGACCTATGAGGAGTACATGCAAATAGTCTTACCATTTATTGTTGCCTAG___AGAGGTTTGACTTAATTATGATACCATAGTTGCATGTAGCTTTATTAGAAAGAGATTGTGCCGTGTGATAATAAAGGTTGCTCTTTTCGCATAGGATTTGTTTGACTTGCATTGTCTGGTTAAAATTGGTTACATGTAACAACTTAAAGAAATTCAATTGTGTCATTATACAGACACAGCGTAGTGTACTTGATGGAGTAATCATATTATCATCATCGCGCTGAGTATAACAGTATTGATAGG

Fln Alignment:

biogeco1_euler_20471___GTDPEIIRSFQMCDQDGSGFIDDKELQRALSSANQSFSIRTVHLLMFEFTRNNSMKIGPQEFTSLWHSLQAWRAIFERFDRDRSGKIESMELRDALLxxxxxxxxSILQILVSKYDKTGQSRGIDYDNFIECSLVVKGLTDKFKEKDKSYVGSATLTYEEYMQIVLPFIVA
B8LNQ9________________GTDPEIIRSFQMCDQDGSGFIDDKELQRALSSASHSFSLRTVHLLMFEFTRNNSMKIGPQEFTSLWHSLQAWRAIFERFDRDRSGKIETMELRDALLxxxxxxxxTILQTLVSKYDKTGQSRGIDYDNFIECSLVVKGLTDKFKEKDKSYVGSASLTYEEFMQIVLPFIVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain