SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene207687

Length: 1196 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene207687

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_83.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SMH3_VITVI	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	ATP binding protein, putative	-	-	1.831e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	2.171e-08	-
Sma3		EC:2.7.11.3-	-	3.943e-07	-

Source	Gene names
Sma3	AT3G13690; AT3G24550; AT4g01330; AT4g02010; AT4g32710; AT4g34440; A_IG002N01.22; At1g01540; At1g26150; At1g49270; At1g52290; At1g55200; At1g68690; At1g70450; At1g70460; At2g18470; At2g20300; At2g42960; At3g13690; At3g17420; At3g24550; At4g02010; At4g32710

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	protoderm histogenesis	GO:0010068	Biological Process	-
Sma3	cuticle development	GO:0042335	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-
Sma3	organ formation	GO:0048645	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Dil domain	IPR018444	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G68690.1	Protein kinase superfamily protein chr1:25789192-25791886 FORWARD LENGTH=708	64%
RefSeq	Arabidopsis thaliana	NP_177036.1	protein kinase-like protein [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002315972.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: your sequence is shorter than subject: 336 - 656

Fln protein: WGAARGIAYLHEDCHPRIIHRDIKGSNILLDDRFEAQVSDFGLAKLASDTNTHVTTRVMGTFGYMAPEYASSGKLTVRSDVFSFGVVLLELVTGRKPVDVSQPLGDESLVEWARPLLNRALEEGNFEELADPRLEKNFDEGEMFRMVEAAAACVRHSARRRPGMGQVGNCLVGPFHCILLMPCNNVGVLLFVFM*VVRALESNAAIGDLNNGVKPGESVMYNSAQYSADIRRFQRMAFGSHDNASDFSEVTSENDMNLSAYSNEFRRSKELEAKQTRHWKSELAMSCACGGESPSSVESETRPINRSHIYRDEMNEEKSSGEAPIPINCKSLTGR*

Protein Length: 337

Fln nts: ATGGGGAGCAGCTCGTGGAATAGCATATCTACATGAAGATTGTCATCCTAGAATAATTCACAGGGATATCAAGGGATCGAACATTCTATTGGACGACAGATTTGAAGCACAGGTGTCAGATTTTGGACTTGCAAAACTAGCATCAGATACCAATACGCATGTGACAACCCGTGTCATGGGAACCTTTGGGTATATGGCACCGGAATATGCATCAAGTGGAAAGCTCACTGTCAGGTCTGATGTATTCTCATTTGGGGTTGTGTTATTGGAGCTTGTGACTGGGCGGAAGCCTGTTGATGTGTCACAGCCTCTTGGTGATGAGAGCTTGGTTGAATGGGCTCGACCTTTACTTAACCGTGCCCTTGAAGAGGGGAACTTTGAAGAATTAGCTGATCCAAGGCTTGAGAAAAACTTTGATGAGGGTGAAATGTTTCGGATGGTTGAAGCTGCAGCAGCATGTGTACGTCACTCAGCTCGTAGAAGGCCAGGGATGGGGCAGGTAGGTAATTGTTTGGTTGGTCCATTTCATTGCATACTTCTCATGCCTTGCAATAATGTTGGTGTGCTGCTGTTTGTCTTTATGTAGGTGGTAAGGGCATTGGAAAGTAATGCTGCAATTGGAGATCTGAACAATGGAGTCAAACCTGGTGAGAGTGTAATGTATAATTCTGCACAGTACTCTGCAGATATCAGGAGATTTCAGAGGATGGCATTTGGCAGCCATGACAATGCTAGTGATTTCAGTGAAGTCACTAGTGAAAACGACATGAATCTCTCTGCATATAGCAATGAGTTTCGCAGGAGCAAGGAATTAGAAGCTAAACAAACCAGGCACTGGAAATCAGAGTTAGCCATGTCATGTGCTTGTGGTGGTGAGTCCCCAAGCAGTGTTGAATCAGAGACACGTCCAATAAACAGGTCACATATTTACAGGGATGAAATGAATGAGGAGAAAAGTTCTGGTGAGGCTCCAATTCCAATCAATTGTAAATCTCTTACAGGACGTTAG___CTAACCTCTGAGAGAAATTTCTGCCCCAAATGAAAGAATGTATGGGCGGCTTCTATCAATGTCGGATCAGTAGGCCCACTCTACCTGAATTACTCACACGAGGTTGTCAAACAATTGGATTCTCTGAAGTTGGGCAGGCGACTAAATCCAATGAAGGAAGCTCTGAGCCTTGACAAGTTCTTGGTGG

Fln Alignment:

biogeco1_euler_22720___GAARGIAYLHEDCHPRIIHRDIKGSNILLDDRFEAQVSDFGLAKLASDTNTHVTTRVMGTFGYMAPEYASSGKLTVRSDVFSFGVVLLELVTGRKPVDVSQPLGDESLVEWARPLLNRALEEGNFEELADPRLEKNFDEGEMFRMVEAAAACVRHSARRRPGMGQVGNCLVGPFHCILLMPCNNXXXXXXXXXXXXRALESNAAIGDLNNGVKPGESVMYNSA--------QYSADIRRFQRMAFGSHDNASDFSEVTSENDMNLSAYSNEFRRSKELEA
C0PRI9________________GAARGLAYLHEDCYPKIIHRDIKASNILLDSNFEAKVADFGLAKLASEDFTHVSTRVMGTFGYLAPEYASSGKLTDRSDVFSFGVMLLELITGRRPVDTTPSFAEDSLVDWARPLLARAMEDGNLDALVDPRIQNNYNLNEMMRVVACAASSVRHSARRRPRMGQI-----------------------------VRVLEGDVSLDDLNEGVRPGHSTHYGSVGSSDYDTNQYSEDMKKFRKMALGSQEHGSEYSDPTSEYGLNQSVSSSEYLQSKEVES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain