SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene207680

Length: 2160 nt

UniGene Fasta

>sp_v3.0_unigene207680
ACATGGGGGAGGATGCTTAGCCCGATTCAAAATAGATAAATAGTATGTTTCAAATTACCATGGTGGATACTCCATGTGGCGGGTTACCATTGGTTCTATGACGTGTCGAGGTTGCCATAGAGGTAGGTGATACACAAATATATCAGCAAACCAAAACTAAATGTCCAACCCATGGAGCGGAAATCTTAATTTTTATTACTGGGCGGAAGGCAGGACAGACAGAACTCTCTGCATCTCGGCTCCCTACAGGTCGGAAACCCTTGGCCTGCGCATCCATGTTTGGTTTCGATCCATGGTTCTGCCCTTAACATTTCAGGTTTTTAAGGGGTTTCACGCTTAATTCTGAACGTATAGGGGTTTTAGGAGTGTTTACGCTTAATTTTAAGGCGAAATCGGTGCAGATCGGCGATCTCCGGCAGCAGATCTGGAGTTTTTTGGAGCTATATTTGTAAGCTTGATATCTTGGGTTTCTCTTCCGAGAAGGAAAATGCCAAGTGGTGGCGGGTTTCGGGTGCTTCATCTAGTGAGGCCATTTCTGTCAATCTTGCCCGAGGTCCAGACAGCTGAAAGAAAAGTGCCCTTCAGAGAGAAGGTTCTGTACACTGTAATCTCGCTTTTTATCTTTTTAGTGTGCAGTCAGTTGCCCCTATATGGCATACATTCAGCAACTGGGGCGGATTGGATGCGTGTAATTCTGGCTTCTAATCGTGGAACTGTTATGGAGCTTGGTATTACCCCAATCGTTACTTCGGGCCTAGTAATGCAGCTTTTGGCAGGATCCAAGATAATTGAGGTGGATAACAGTGTTCGTGAAGATCGGGCTCTTCTTAATGGGGCTCAGAAGTTACTCGGTGTCCTCATCACAATAGGTGAGGCAGTTGCATACGTGCTGTCTGGAATGTATGGTGACATCCGGGACCTCGGAGCTGGCAATGCCATCCTCATTATTGTCCAGCTCTTTTTCGCTGGTATAATTGTGATATGTTTGGACGAGCTACTCCAGAAAGGTTATGGATTGGGATCTGGCATTTCATTATTCATTGCTACTAATATATGCGAGAGCATTATATGGAAGGCCTTTAGTCCCACTACAATCAATAGTGGACGAGGTGCAGAGTTCGAGGGAGCTGTTATTGCATTGTTCCATTTGTTGATAACCAGAACAGACAAGGTCCGGGCACTGCGGGAAGCTTTCTACCGGCAGAATCTTCCAAATGTTACCAACCTGCTTGCTACAGTTCTGGTTTTTCTCGTTGTCATATACTTCCAGGGTTTTCGTGTTGTTTTACCAGTGAGGTCAAAGAATGCCCGTGGGCAACAGGGATCATATCCTATCAAGTTATTCTATACCTCAAACATGCCAATTATTCTACAGTCAGCTCTTGTTTCAAACTTGTATTTTATTTCCCAGTTGCTTTACCGGAAGTACAGTGGAAACTTTCTTGTTAATCTGTTGGGCAAGTGGAAGGAGTCTGAATATTCATCAAGTGGTCAATTTGTTCCTGTAGGTGGTCTTGTTTATTACATCACTCCACCTTCCAGCTTGGCGGATATGGCAGCAAATCCTTTTCATGCACTGTTCTATTTAACTTTTATGCTGACAGCCTGTGCTCTATTCTCAAAGACATGGATTGAGGTATCTGGCTCCTCTGCAAGAGATGTGGCAAAACAGCTGAAGGAACAACAAATGGTTATGCCAGGCCACAGAGAATCTAATCTTCAGAAAGCGGCATTTGGTGGCATGTGCATTGGTGCCCTTACTGTCATGGCTGATTTTATGGGGGCCATTGGTTCTGGGACAGGAATTCTTCTTGCAGTGACTATTATTTATCAGTACTTTGAGACATTCGAGAAGGAAAGGGCCAGTGAACTAGGTTTCTTTGGTTTTTAATGCAGTCATTTGTATTTGACAATTTTAGAGGTTAGGATGCAGACTAAACTTTAGTTGGGCTAATGCTATGGCCCTTGAAGCATGTGAATGCTGGGGATTTTGATGCCCCTTCGAAGTTTTGCAGCCATCTTTTGATTTAGATATTAAATAGAATTCACAGAAGTCAAAACTGGCAGGCAGAAAAGTCCTGTGTGCTGTACTGACATTGAGATGTTTAGGGCACTTTGAAATAACTTCTTGGTTTTTGGGTACAAAAGCAATTGTATAGT

Ace file of the UniGene sp_v3.0_unigene207680

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[U] COG0201 Preprotein translocase subunit SecY	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SecY protein	IPR002208	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G34250.1	SecY protein transport family protein chr2:14462635-14464572 FORWARD LENGTH=475	88%
RefSeq	Arabidopsis thaliana	NP_001031476.1	protein transport protein SEC61 subunit alpha [Arabidopsis thaliana]	88%
RefSeq	Populus trichocarpa	XP_002316850.1	Sec61 transport protein [Populus trichocarpa]	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKZ6

Fln msg:

Fln protein: MPSGGGFRVLHLVRPFLSILPEVQTAERKVPFREKVLYTVISLFIFLVCSQLPLYGIHSATGADWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNSVREDRALLNGAQKLLGVLITIGEAVAYVLSGMYGDIRDLGAGNAILIIVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLVVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFLVNLLGKWKESEYSSSGQFVPVGGLVYYITPPSSLADMAANPFHALFYLTFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKAAFGGMCIGALTVMADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF*

Protein Length: 469

Fln nts: ACATGGGGGAGGATGCTTAGCCCGATTCAAAATAGATAAATAGTATGTTTCAAATTACCATGGTGGATACTCCATGTGGCGGGTTACCATTGGTTCTATGACGTGTCGAGGTTGCCATAGAGGTAGGTGATACACAAATATATCAGCAAACCAAAACTAAATGTCCAACCCATGGAGCGGAAATCTTAATTTTTATTACTGGGCGGAAGGCAGGACAGACAGAACTCTCTGCATCTCGGCTCCCTACAGGTCGGAAACCCTTGGCCTGCGCATCCATGTTTGGTTTCGATCCATGGTTCTGCCCTTAACATTTCAGGTTTTTAAGGGGTTTCACGCTTAATTCTGAACGTATAGGGGTTTTAGGAGTGTTTACGCTTAATTTTAAGGCGAAATCGGTGCAGATCGGCGATCTCCGGCAGCAGATCTGGAGTTTTTTGGAGCTATATTTGTAAGCTTGATATCTTGGGTTTCTCTTCCGAGAAGGAAA_-_ATGCCAAGTGGTGGCGGGTTTCGGGTGCTTCATCTAGTGAGGCCATTTCTGTCAATCTTGCCCGAGGTCCAGACAGCTGAAAGAAAAGTGCCCTTCAGAGAGAAGGTTCTGTACACTGTAATCTCGCTTTTTATCTTTTTAGTGTGCAGTCAGTTGCCCCTATATGGCATACATTCAGCAACTGGGGCGGATTGGATGCGTGTAATTCTGGCTTCTAATCGTGGAACTGTTATGGAGCTTGGTATTACCCCAATCGTTACTTCGGGCCTAGTAATGCAGCTTTTGGCAGGATCCAAGATAATTGAGGTGGATAACAGTGTTCGTGAAGATCGGGCTCTTCTTAATGGGGCTCAGAAGTTACTCGGTGTCCTCATCACAATAGGTGAGGCAGTTGCATACGTGCTGTCTGGAATGTATGGTGACATCCGGGACCTCGGAGCTGGCAATGCCATCCTCATTATTGTCCAGCTCTTTTTCGCTGGTATAATTGTGATATGTTTGGACGAGCTACTCCAGAAAGGTTATGGATTGGGATCTGGCATTTCATTATTCATTGCTACTAATATATGCGAGAGCATTATATGGAAGGCCTTTAGTCCCACTACAATCAATAGTGGACGAGGTGCAGAGTTCGAGGGAGCTGTTATTGCATTGTTCCATTTGTTGATAACCAGAACAGACAAGGTCCGGGCACTGCGGGAAGCTTTCTACCGGCAGAATCTTCCAAATGTTACCAACCTGCTTGCTACAGTTCTGGTTTTTCTCGTTGTCATATACTTCCAGGGTTTTCGTGTTGTTTTACCAGTGAGGTCAAAGAATGCCCGTGGGCAACAGGGATCATATCCTATCAAGTTATTCTATACCTCAAACATGCCAATTATTCTACAGTCAGCTCTTGTTTCAAACTTGTATTTTATTTCCCAGTTGCTTTACCGGAAGTACAGTGGAAACTTTCTTGTTAATCTGTTGGGCAAGTGGAAGGAGTCTGAATATTCATCAAGTGGTCAATTTGTTCCTGTAGGTGGTCTTGTTTATTACATCACTCCACCTTCCAGCTTGGCGGATATGGCAGCAAATCCTTTTCATGCACTGTTCTATTTAACTTTTATGCTGACAGCCTGTGCTCTATTCTCAAAGACATGGATTGAGGTATCTGGCTCCTCTGCAAGAGATGTGGCAAAACAGCTGAAGGAACAACAAATGGTTATGCCAGGCCACAGAGAATCTAATCTTCAGAAAGCGGCATTTGGTGGCATGTGCATTGGTGCCCTTACTGTCATGGCTGATTTTATGGGGGCCATTGGTTCTGGGACAGGAATTCTTCTTGCAGTGACTATTATTTATCAGTACTTTGAGACATTCGAGAAGGAAAGGGCCAGTGAACTAGGTTTCTTTGGTTTTTAA___TGCAGTCATTTGTATTTGACAATTTTAGAGGTTAGGATGCAGACTAAACTTTAGTTGGGCTAATGCTATGGCCCTTGAAGCATGTGAATGCTGGGGATTTTGATGCCCCTTCGAAGTTTTGCAGCCATCTTTTGATTTAGATATTAAATAGAATTCACAGAAGTCAAAACTGGCAGGCAGAAAAGTCCTGTGTGCTGTACTGACATTGAGATGTTTAGGGCACTTTGAAATAACTTCTTGGTTTTTGGGTACAAAAGCAATTGTATAGT

Fln Alignment:

biogeco1_euler_14354___MPSGGGFRVLHLVRPFLSILPEVQTAERKVPFREKVLYTVISLFIFLVCSQLPLYGIHSATGAD---WMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNSVREDRALLNGAQKLLGVLITIGEAVAYVLSGMYGDIRDLGAGNAILIIVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLVVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFLVNLLGKWKESEYSSSGQFVPVGGLVYYITPPSSLADMAANPFHALFYLTFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQK---------AAFGGMCIGALTVMADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
B8LKZ6________________MPSGG-FRVLHLVRPFLSILPEVQTADRKVPFREKVLYTVISLFIFLVCSQLPLYGIHSATGADPFYWMRVILASNRGTVMELGITPLVTSGLVMQLLAGSKIIEVDNSVREDRELLNGAQKLLGVLITIGEAVAYVLSGMYGDITDLGAGNAILIIVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFLVNMLGKWKESEYSSSGQSIPVGGLVYYITPPSSLAEMAANPFHALFYLTFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGMCIGALTVMADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain