SustainPineDB

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Assembly info
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SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene207568

Length: 214 nt

UniGene Fasta

>sp_v3.0_unigene207568
ATGGCGTTTGTTCCAGATGTGTACTCGGAAAACATCATCGGAACAGCTTTGAAAACATGCCTCTTGGCACGCCTCAGCCCCTTTACAGCTTGTGCACAGTGATTTATGTGGTCCACTTCCTGTTGCTTCATTCTCTGGCTGCAAGTATTTCTTAACTTTCATTGATGATTTCTCCAGACGCACTTGGGTATACTTCTTAAAACTCAAGAGCGAA

Ace file of the UniGene sp_v3.0_unigene207568

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Integrase n=1 Tax=Cucumis melo subsp. melo RepID=A6YTD9_CUCME	-	-	2.0e-14	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%

Source	Gene names
Sma3	GSVIVT00019821001; T2O9.150; VITISV_001479; VITISV_001759; VITISV_006839; VITISV_009113; VITISV_010605; VITISV_015834; VITISV_022356; VITISV_024822; VITISV_028342; VITISV_032634; VITISV_033767; VITISV_034935; VITISV_037436; VITISV_037705; VITISV_038665; V

Source	GOs	Term	Type	Identity
Sma3	phosphopyruvate hydratase complex	GO:0000015	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	dihydrofolate reductase activity	GO:0004146	Molecular Function	-
Sma3	phosphopyruvate hydratase activity	GO:0004634	Molecular Function	-
Sma3	ionotropic glutamate receptor activity	GO:0004970	Molecular Function	-
Sma3	extracellular-glutamate-gated ion channel activity	GO:0005234	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	nutrient reservoir activity	GO:0045735	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	glycine biosynthetic process	GO:0006545	Biological Process	-
Sma3	nucleotide biosynthetic process	GO:0009165	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Germin	IPR001929	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 230 aas, your sequence is shorter than subject: 71 - 407

Fln protein: WRLFQMCTRKTSSEQL*KHASWHASAPLQLVHSDLCGPLPVASFSGCKYFLTFIDDFSRRTWVYFLKLKSE

Protein Length: 72

Fln nts: ATGGCGTTTGTTCCAGATGTGTACTCGGAAAACATCATCGGAACAGCTTTGAAAACATGCCTCTTGGCACGCCTCAGCCCCTTTACAGCTTGTGCACAGTGATTTATGTGGTCCACTTCCTGTTGCTTCATTCTCTGGCTGCAAGTATTTCTTAACTTTCATTGATGATTTCTCCAGACGCACTTGGGTATACTTCTTAAAACTCAAGAGCGAA

Fln Alignment:

AllPine_b_rep_c71396___KTSSEQL*KHASWHASAPLQLVHSDLCGPLPVASFSGCKYFLTFIDDFSRRTWVYFLKLKSE
B8LKX7________________KQHMEKFIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain