SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene207101

Length: 231 nt

UniGene Fasta

>sp_v3.0_unigene207101
CAAGACACTTGATTCTGCTCCTTCGCTTCAATACAGATCACATATATAGTTTTGGATGGTTTTCAAATACGAAGAAAATGGTGCTGAAATTGGTGATTGAAGACGAGAGAAGCAAGAGAAAGGCTATGAAGGCGATTGCAGGGATTGAAGGGGTAGAGTCTGTTACAGTGGATATGAAGGAGAAGAAGATAACTGTCATCGGGGAAGCAGATCCTGCACTTCTCACAGTAA

Ace file of the UniGene sp_v3.0_unigene207101

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Metal ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9TAG3_RICCO	-	-	5.0e-10	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	GOs	Term	Type	e value	Identity
Sma3	metal ion binding	GO:0046872	Molecular Function	0.0	-
Sma3	metal ion transport	GO:0030001	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G01490.1	Heavy metal transport/detoxification superfamily protein chr1:180401-182066 REVERSE LENGTH=177	2.0e-13	54%
RefSeq	Arabidopsis thaliana	NP_171656.1	heavy-metal-associated domain-containing protein [Arabidopsis thaliana]	3.0e-13	54%
RefSeq	Populus trichocarpa	XP_002299508.1	predicted protein [Populus trichocarpa]	2.0e-14	52%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1M9

Fln msg: Distance to subject end: 63 aas, your sequence is shorter than subject: 51 - 117

Fln protein: MVLKLVIEDERSKRKAMKAIAGIEGVESVTVDMKEKKITVIGEADPALLTV

Protein Length: 52

Fln nts: CAAGACACTTGATTCTGCTCCTTCGCTTCAATACAGATCACATATATAGTTTTGGATGGTTTTCAAATACGAAGAAA_-_ATGGTGCTGAAATTGGTGATTGAAGACGAGAGAAGCAAGAGAAAGGCTATGAAGGCGATTGCAGGGATTGAAGGGGTAGAGTCTGTTACAGTGGATATGAAGGAGAAGAAGATAACTGTCATCGGGGAAGCAGATCCTGCACTTCTCACAGTAA

Fln Alignment:

AllPine_b_rep_c69419___KKMVLKLVIEDERSKRKAMKAIAGIEGVESVTVDMKEKKITVIGEADPALLTV
A9P1M9________________KKMELKLVIEDEKSKRRAMKAIAGIEGVESVSVDMKERKMTVIGEADPVSLTV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain