SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene207070

Length: 343 nt

UniGene Fasta

>sp_v3.0_unigene207070
CTTCTGCTGCAGTTAAACAGTTCTCGCCTCCGACATTATTTAAAAGATCGCGTTTCTTCTGTGAACCGCCCATCAATCCATTTTACATACCTTAGCAGCTGTTTCAGAAAGCATCATATTATTTCATGGCGACGATCAAGCTACACGGCCATCACTTATCCACAGCCACCAGATTGGTTCTTTGCTGTTTGGAGGAGAAGCAAGTTGATTACGAGCTCCTCGTCGTCGACCTCGCTGCTGGTGCTCACAATCCGTTTGGATTTGTGCTCTTTATCCGTTTGGAGTTGTGCCCACTATCCAAGATGGGGATCTCACCTTATTCGAATCGAGAGCCATCCTCAAA

Ace file of the UniGene sp_v3.0_unigene207070

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutathione S-transferase-like protein (Fragment) n=9 Tax=Picea sitchensis RepID=E5F6M4_PICSI	-	-	6.0e-19	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G47730.1	ATGSTF8, ATGSTF5, GST6, GSTF8 glutathione S-transferase phi 8 chr2:19558213-19559266 FORWARD LENGTH=263	7.0e-14	48%
RefSeq	Arabidopsis thaliana	NP_850479.1	glutathione S-transferase 6 [Arabidopsis thaliana]	9.0e-14	48%
RefSeq	Populus trichocarpa	XP_002321319.1	predicted protein [Populus trichocarpa]	6.0e-12	50%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQV4

Fln msg: Overlapping hits, possible frame ERROR between 266 and 266, Distance to subject end: 143 aas, your sequence is shorter than subject: 73 - 216

Fln protein: MATIKLHGHHLSTATRLVLCCLEEKQVDYELLVVDLAAGAHNPFGFxxLYPFGVVPTIQDGDLTLFESRAILK

Protein Length: 74

Fln nts: CTTCTGCTGCAGTTAAACAGTTCTCGCCTCCGACATTATTTAAAAGATCGCGTTTCTTCTGTGAACCGCCCATCAATCCATTTTACATACCTTAGCAGCTGTTTCAGAAAGCATCATATTATTTC_-_ATGGCGACGATCAAGCTACACGGCCATCACTTATCCACAGCCACCAGATTGGTTCTTTGCTGTTTGGAGGAGAAGCAAGTTGATTACGAGCTCCTCGTCGTCGACCTCGCTGCTGGTGCTCACAATCCGTTTGGATTTxxxxxxCTTTATCCGTTTGGAGTTGTGCCCACTATCCAAGATGGGGATCTCACCTTATTCGAATCGAGAGCCATCCTCAAA

Fln Alignment:

AllPine_b_rep_c69309___MATIKLHGHHLSTATRLVLCCLEEKQVDYELLVVDLAAGAH------xxxxxxxxPTIQDGDLTLFESRAILK
A9NQV4________________MAAIKVHGYHASTATVMVLCCLNEKEVEYELVLVDLPTGAHKKPEYLxxxxxxxxPTIQDGDLTLYESRAIIR

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
246		50		50	1.0
251			50	50	1.0
253	50	50			1.0
254	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain