SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene206919

Length: 286 nt

UniGene Fasta

>sp_v3.0_unigene206919
TCCGCTGCTCCTCATGGCCGAGCTCTGCAACTTGGCGTCGGCGGCTCTATTGTTTTGGCATTTCCCCACGTTAACCAGGTGAACCAACGCAGGGAGCATACACGTGACTGGTCTCCGGTTTTACGTCAGGGTTAAGAGAAAGTAACCTGCACAGTGTTCAGCACTTCGAGGAGGGATCAGGATGAAGGTGAAAGTTCTCCAGTGGCATGCTGTAGCTTCATGGACATGGGATGCAAAAGATGAGTTATGTGCAATCTGTAAATTGCCTTTTGATGGTTGCTGTACT

Ace file of the UniGene sp_v3.0_unigene206919

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Anaphase-promoting complex subunit 11 n=8 Tax=Magnoliophyta RepID=APC11_ARATH	-	-	5.0e-11	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%

Source	Gene names
Sma3	Os03g0302700; OsI_11204; OsI_25732; OsJ_10533; OsJ_23943; P0710F09.123;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G05870.1	APC11 anaphase-promoting complex/cyclosome 11 chr3:1753961-1754802 FORWARD LENGTH=87	1.0e-14	70%
RefSeq	Arabidopsis thaliana	NP_001189819.1	anaphase-promoting complex subunit 11 [Arabidopsis thaliana]	1.0e-14	70%
RefSeq	Populus trichocarpa	XP_002327938.1	predicted protein, partial [Populus trichocarpa]	8.0e-13	77%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQM0

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 35 - 86

Fln protein: MKVKVLQWHAVASWTWDAKDELCAICKLPFDGCCT

Protein Length: 36

Fln nts: TCCGCTGCTCCTCATGGCCGAGCTCTGCAACTTGGCGTCGGCGGCTCTATTGTTTTGGCATTTCCCCACGTTAACCAGGTGAACCAACGCAGGGAGCATACACGTGACTGGTCTCCGGTTTTACGTCAGGGTTAAGAGAAAGTAACCTGCACAGTGTTCAGCACTTCGAGGAGGGATCAGG_-_ATGAAGGTGAAAGTTCTCCAGTGGCATGCTGTAGCTTCATGGACATGGGATGCAAAAGATGAGTTATGTGCAATCTGTAAATTGCCTTTTGATGGTTGCTGTACT

Fln Alignment:

AllPine_b_rep_c68541___MKVKVLQWHAVASWTWDAKDELCAICKLPFDGCCT
A9NQM0________________MKVKVIQWHAVASWTWDAKDELCAICKLPFDGCCT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain