SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene206645

Length: 147 nt

UniGene Fasta

>sp_v3.0_unigene206645
TAGAACAAAGCTTGAGGCAAAATAAAAGAAATGTACCTTTATTGGATATGGTGTTAATGATTTTGGTTATCGCTTATATGATTATGAAAATCACAAAATCATTAGAAGCAGAGATGTAATATTCATTGAAAAGGTCAATCAATTGCA

Ace file of the UniGene sp_v3.0_unigene206645

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).	-	-	0.0	60%

Source	Gene names
Sma3	VITISV_000081; VITISV_001479; VITISV_003944; VITISV_005765; VITISV_008416; VITISV_008497; VITISV_008799; VITISV_014388; VITISV_018063; VITISV_021529; VITISV_022356; VITISV_023139; VITISV_024553; VITISV_024659; VITISV_024822; VITISV_028342; VITISV_030993;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein of unknown function DUF295	IPR005174	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P10978

Fln msg: Distance to subject end: 616 aas, your sequence is shorter than subject: 48 - 1328

Fln protein: RTKLEAK*KKCTFIGYGVNDFGYRLYDYENHKIIRSRDVIFIEKVNQL

Protein Length: 49

Fln nts: TAGAACAAAGCTTGAGGCAAAATAAAAGAAATGTACCTTTATTGGATATGGTGTTAATGATTTTGGTTATCGCTTATATGATTATGAAAATCACAAAATCATTAGAAGCAGAGATGTAATATTCATTGAAAAGGTCAATCAATTGCA

Fln Alignment:

AllPine_b_rep_c66976___RTKLEAK*KKCTFIGYGVNDFGYRLYDYENHKIIRSRDVIFIE
P10978________________RTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain