SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene206439

Length: 402 nt

UniGene Fasta

>sp_v3.0_unigene206439
GCACACAAGATCAGATTGGAATCAGATTCACCAGAGGTTGCTGCACCATCTCCTGGACACCCCAAGCTCAGCAACACCAGCAATACTGCTACTACTGCTAATAATTATAGTAGCAGTAATCACAACAATAATACTACCAGTACAGATAACTATAGTAAACAGCAGCAGCAGCAGCAACAGGTCGCTCAGCTTGCAGGAGGGGATGAGGATGTGCTTGGAAGTGAAGATTATGAAAGAGGATCAGCTGGAAATCGATGGCCTCGGCAAGAAACCCTGGCCCTTCTCAAAATTCGATCCGAGATGGATGCCAATTTCCGAGATGCCAGCCTCAAAGGACCTCTCTGGGAAGATGTCTCAAGGAGGCTCGCAGAACTGGGGTACTATAGAAGTGCGAAGAAATGC

Ace file of the UniGene sp_v3.0_unigene206439

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	Isoform 2 of Trihelix transcription factor GTL1 OS=Arabidopsis thaliana GN=GTL1	-	-	0.0	42%
Sma3	GT-2 factor	-	-	8.448e-08	-

Source	Gene names
Sma3	At1g33240; At1g76880; DF1; F7O12.5; GSVIVT00000450001; GSVIVT00031772001; GSVIVT00034901001; GSVIVT00034998001; GT-2A; GT2; GTL1; GTL2; H0115B09.8; LOC_Os03g02240; LOC_Os10g37240; OSJNBa0011L07.15; OSJNBa0076F20.5; OSJNBa0090O10.6; Os03g0113500; OsI_09711

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	MADF domain	IPR006578	-	-
Sma3	Protein of unknown function DUF810	IPR008528	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Myb-like domain	IPR017877	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G76880.1	Duplicated homeodomain-like superfamily protein chr1:28865594-28867931 FORWARD LENGTH=603	1.0e-23	69%
RefSeq	Arabidopsis thaliana	NP_177814.1	putative trihelix DNA-binding protein [Arabidopsis thaliana]	2.0e-23	69%
RefSeq	Populus trichocarpa	XP_002300534.1	predicted protein, partial [Populus trichocarpa]	5.0e-27	71%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9C882-2

Fln msg: Distance to subject end: 103 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 134 - 338

Fln protein: AHKIRLESDSPEVAAPSPGHPKLSNTSNTATTANNYSSSNHNNNTTSTDNYSKQQQQQQQVAQLAGGDEDVLGSEDYERGSAGNRWPRQETLALLKIRSEMDANFRDASLKGPLWEDVSRRLAELGYYRSAKKC

Protein Length: 135

Fln nts: GCACACAAGATCAGATTGGAATCAGATTCACCAGAGGTTGCTGCACCATCTCCTGGACACCCCAAGCTCAGCAACACCAGCAATACTGCTACTACTGCTAATAATTATAGTAGCAGTAATCACAACAATAATACTACCAGTACAGATAACTATAGTAAACAGCAGCAGCAGCAGCAACAGGTCGCTCAGCTTGCAGGAGGGGATGAGGATGTGCTTGGAAGTGAAGATTATGAAAGAGGATCAGCTGGAAATCGATGGCCTCGGCAAGAAACCCTGGCCCTTCTCAAAATTCGATCCGAGATGGATGCCAATTTCCGAGATGCCAGCCTCAAAGGACCTCTCTGGGAAGATGTCTCAAGGAGGCTCGCAGAACTGGGGTACTATAGAAGTGCGAAGAAATGC

Fln Alignment:

AllPine_b_rep_c65566___EDVLGSEDYERGSAGNRWPRQETLALLKIRSEMDANFRDASLKGPLWEDVSRRLAELGYYRSAKKC
Q9C882-2______________EMVMSSEQSSLPSS-SRWPKAEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRC

SSRs (tot: 1)

Start position	End position	Sequence	Length
160	176	CAG CAG CAG CAG CAG CA	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain