SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene206383

Length: 485 nt

UniGene Fasta

>sp_v3.0_unigene206383
CCGAGGCTCTGTCCAGGAATGCATCTGGCAAAACTTGAGCTGGCCCTCTTTCTTCATAACTTCGTCACCAAATTCAGATGGGAGGCACTGGAGGATGATAAGATCTCCTACTTTCCTGTTTCTCACTTGACTAAAGGCTTTCCGATCCGTCTACATCATCTTCAAGAACGAATGGATGATTAATCGCATTATAATATGATTTGATTTTTGCAGTATGGAGCGTTAAAAACAGTAAGCAAGTTTGAAGCATAAAACAATAATAGCCGCTCTGTGGACATATAACTATCATATTTCAAACATATTTATGTATTTCCTGTATTGAAGCCCGACAATTTGTGTTTCACTTTCATTCCCATCGGGTTGATGTATTAATCAGCTATTATCGCATATCCTTGTTTAAACAAACGAGATAACAAGGTTCCAAGTGATTAAAAAAGTGTTCCACATAATAGTATGGTTTACCAGAAAAATATTAAACAGTTGAG

Ace file of the UniGene sp_v3.0_unigene206383

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Cytochrome P450 720B2; AltName: Full=Cytochrome P450 CYPB gb\|AAX07432.1\| cytochrome P450 CYPB [Pinus taeda]	-	-	2.0e-18	86%
FL-Next	tr=CYP720B2; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.14.-.-	-	4.832e-06	-

Source	Gene names
Sma3	CYP720B1; CYP720B2;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G73340.1	Cytochrome P450 superfamily protein chr1:27573136-27575273 FORWARD LENGTH=514	1.0e-12	50%
RefSeq	Arabidopsis thaliana	NP_177477.3	Cytochrome P450 superfamily protein [Arabidopsis thaliana]	1.0e-12	50%
RefSeq	Populus trichocarpa	XP_002331913.1	cytochrome P450 [Populus trichocarpa]	6.0e-13	51%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E5FA69

Fln msg: your sequence is shorter than subject: 61 - 486

Fln protein: PRLCPGMHLAKLELALFLHNFVTKFRWEALEDDKISYFPVSHLTKGFPIRLHHLQERMDD*

Protein Length: 62

Fln nts: CCGAGGCTCTGTCCAGGAATGCATCTGGCAAAACTTGAGCTGGCCCTCTTTCTTCATAACTTCGTCACCAAATTCAGATGGGAGGCACTGGAGGATGATAAGATCTCCTACTTTCCTGTTTCTCACTTGACTAAAGGCTTTCCGATCCGTCTACATCATCTTCAAGAACGAATGGATGATTAA___TCGCATTATAATATGATTTGATTTTTGCAGTATGGAGCGTTAAAAACAGTAAGCAAGTTTGAAGCATAAAACAATAATAGCCGCTCTGTGGACATATAACTATCATATTTCAAACATATTTATGTATTTCCTGTATTGAAGCCCGACAATTTGTGTTTCACTTTCATTCCCATCGGGTTGATGTATTAATCAGCTATTATCGCATATCCTTGTTTAAACAAACGAGATAACAAGGTTCCAAGTGATTAAAAAAGTGTTCCACATAATAGTATGGTTTACCAGAAAAATATTAAACAGTTGAG

Fln Alignment:

AllPine_b_rep_c65344___RLCPGMHLAKLELALFLHNFVTKFRWEALEDDKISYFPVSHLTKGFPIRLHHLQERMDD
E5FA69________________RLCPGMHLAKLELALFLHNFVTKFRWEALQHDKISYFPFPRLIKGLPIRL-HLRERLDD

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
183		14		85	0.993533
188	14		85		0.993533
196	85		14		0.993533
199			28	71	1.0
210		28		71	1.0
211	28			71	1.0
212			33	66	1.0
213			71	28	1.0
216			85	14	0.993533
217	14			85	0.993533
218	85		14		0.993533
219		14		85	0.993533
224		85		14	0.993533
258		75		25	0.996473
267		75		25	0.996473
272		75		25	0.996473
305		25		75	0.996473
327		33	66		0.997452
329		66		33	0.997453
330		66		33	0.997453
332	66			33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain