SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene206335

Length: 394 nt

UniGene Fasta

>sp_v3.0_unigene206335
CTTGGGTATATCAGAGCTTTGGCTCAAACAAGCTATCCGGACCAGGTAAGCTTCAGATCTTGGATCCTAGACCTCTGGTTTTTCGCTATTAGGAGAGACACATTGAATTTCGAGGATTTTGTTTGATTTATATATAAGCAGTGTATAGGTAGGCAGTTATGGATTCAAACAAGGGGCAGGGTGGAATCCAGTTGTTGCTGGCTGCAGAGCAGGAGGCGCAAAACATCGTTGCTTCTGCTAGAGCTGCAAAAATGGCTAGATTGAAACAAGCAAAAGATGAAGCTGAGAGGGAAATTGCTTCTTATCGGGCACAGAGGGAGGCTGAATTTCGGAAGAAGGTTGCAGAGACCAGTGGTGATTCTGGATCCAATGTTAAGCGACTTGACGAAGAAAC

Ace file of the UniGene sp_v3.0_unigene206335

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vacuolar ATP synthase subunit G plant, putative n=1 Tax=Ricinus communis RepID=B9SUA9_RICCO	-	-	3.0e-25	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	Vacuolar ATP synthase subunit G plant, putative	-	-	2.823e-12	-

Source	Gene names
Sma3	6J23.3; 8F2.6; ATPvG; AVMA10; At3g01390; At4g23710; At4g25950; B0403H10-OSIGBa0105A11.13; CHLREDRAFT_59366; F20B18.60; GSVIVT00023190001; GSVIVT00038681001; GSVIVT00038685001; GSVIVT00038691001; GSVIVT00038692001; MICPUN_57558; MtrDRAFT_AC148995g23v2; OJ1

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	vacuolar proton-transporting V-type ATPase complex	GO:0016471	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	hydrogen-exporting ATPase activity, phosphorylative mechanism	GO:0008553	Molecular Function	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	GO:0016820	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	proton transport	GO:0015992	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Vacuolar (H+)-ATPase G subunit	IPR005124	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G01390.1	VMA10, AVMA10 vacuolar membrane ATPase 10 chr3:150265-150922 REVERSE LENGTH=110	1.0e-31	70%
RefSeq	Arabidopsis thaliana	NP_850489.1	V-type proton ATPase subunit G1 [Arabidopsis thaliana]	1.0e-31	70%
RefSeq	Populus trichocarpa	XP_002316363.1	predicted protein [Populus trichocarpa]	3.0e-32	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRJ1

Fln msg: Distance to subject end: 31 aas, your sequence is shorter than subject: 78 - 110

Fln protein: MDSNKGQGGIQLLLAAEQEAQNIVASARAAKMARLKQAKDEAEREIASYRAQREAEFRKKVAETSGDSGSNVKRLDEE

Protein Length: 79

Fln nts: CTTGGGTATATCAGAGCTTTGGCTCAAACAAGCTATCCGGACCAGGTAAGCTTCAGATCTTGGATCCTAGACCTCTGGTTTTTCGCTATTAGGAGAGACACATTGAATTTCGAGGATTTTGTTTGATTTATATATAAGCAGTGTATAGGTAGGCAGTT_-_ATGGATTCAAACAAGGGGCAGGGTGGAATCCAGTTGTTGCTGGCTGCAGAGCAGGAGGCGCAAAACATCGTTGCTTCTGCTAGAGCTGCAAAAATGGCTAGATTGAAACAAGCAAAAGATGAAGCTGAGAGGGAAATTGCTTCTTATCGGGCACAGAGGGAGGCTGAATTTCGGAAGAAGGTTGCAGAGACCAGTGGTGATTCTGGATCCAATGTTAAGCGACTTGACGAAGAAAC

Fln Alignment:

AllPine_b_rep_c64932___MDSNKGQGGIQLLLAAEQEAQNIVASARAAKMARLKQAKDEAEREIASYRAQREAEFRKKVAETSGDSGSNVKRLDEE
A9NRJ1________________MDSNKGQGGIQLLLAAEQEAQNIVASARAAKMARLKQAKDEAEREIASYRAQREAEFRKKVSETSGDSGSNVKRLEEE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
79	50		50		1.0
284	75			25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain