SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene206212

Length: 483 nt

UniGene Fasta

>sp_v3.0_unigene206212
GATGTGCTCTGGGAAAGTATGCCAAAGTGGCATTTCCTAGAAGTAAAAATAGGGCCAAGAGTGTATTAGGTTGATACACTCAGATATCTGCGGACCTATGTCCACTAAAGCTCTTAGTGGTGCCGAGTACTTCGTTACCTTCATTGATGACTACTCAAGGAAAACTTGGATTTATTTTTTGAAGACCAAGGACGAGGTTTTCTGTCTATTCAAAGAGTTCAAGGCTCTGGTGGAGAATCTGACTGGGAAGAAAATAAAATTTTTGCGATCAGATAATGGTGGAGAGTATGTCAATAAGGACTTCACTGATTTTTGCGCGAAGGAGGGCATCAGAAGAGAGTGGATAGATACTTACAATCTAGAGCAGAATGAGTATCAGAAAGAAAGAACAAGATTATCGTAGAAGCAGCTTGGACCATGATGTATGACCCGGATATGCCAAAGTTCTTGTGGGCAGAAGCATGCAACACGGCAATCTATTAG

Ace file of the UniGene sp_v3.0_unigene206212

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein n=1 Tax=Drosophila melanogaster RepID=B6V6Z8_DROME	-	-	1.0e-32	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Copia-type polyprotein	-	-	3.446e-07	-

Source	Gene names
Sma3	AT4g04280; AT4g10460; At2g15700; At2g17490; BA4; F11I4_21; F7L13.40; Os04g0621600; Rtsp-1AA; SDM1_42t00010; SDM1_46t00012; SDM1_47t00010; T15M6.14; T16L24.270; T18I24.5; T20K12.230; T27D20.5; T28P6.8; TnInt1; VITISV_000081; VITISV_001135; VITISV_001281; V

Source	GOs	Term	Type	Identity
Sma3	phosphopyruvate hydratase complex	GO:0000015	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	dihydrofolate reductase activity	GO:0004146	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	phosphopyruvate hydratase activity	GO:0004634	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	ionotropic glutamate receptor activity	GO:0004970	Molecular Function	-
Sma3	extracellular-glutamate-gated ion channel activity	GO:0005234	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	O-methyltransferase activity	GO:0008171	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	nutrient reservoir activity	GO:0045735	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	glycine biosynthetic process	GO:0006545	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	nucleotide biosynthetic process	GO:0009165	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	transposition	GO:0032196	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Germin	IPR001929	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	O-methyltransferase, family 3	IPR002935	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3		IPR010256	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Overlapping hits, possible frame ERROR between 394 and 373, Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 134 aas, your sequence is shorter than subject: 161 - 407

Fln protein: MCSGKVCQSGIS*K*K*GQECIRLIHSDICGPMSTKALSGAEYFVTFIDDYSRKTWIYFLKTKDEVFCLFKEFKALVENLTGKKIKFLRSDNGGEYVNKDFTDFCAKEGIRREWIDTYNLEQNxxxxxxxxxIVEAAWTMMYDPDMPKFLWAEACNTAIY*

Protein Length: 162

Fln nts: GATGTGCTCTGGGAAAGTATGCCAAAGTGGCATTTCCTAGAAGTAAAAATAGGGCCAAGAGTGTATTAGGTTGATACACTCAGATATCTGCGGACCTATGTCCACTAAAGCTCTTAGTGGTGCCGAGTACTTCGTTACCTTCATTGATGACTACTCAAGGAAAACTTGGATTTATTTTTTGAAGACCAAGGACGAGGTTTTCTGTCTATTCAAAGAGTTCAAGGCTCTGGTGGAGAATCTGACTGGGAAGAAAATAAAATTTTTGCGATCAGATAATGGTGGAGAGTATGTCAATAAGGACTTCACTGATTTTTGCGCGAAGGAGGGCATCAGAAGAGAGTGGATAGATACTTACAATCTAGAGCAGAATxxxxxxxxxxxxxxxxxxxxxxxxxxxATCGTAGAAGCAGCTTGGACCATGATGTATGACCCGGATATGCCAAAGTTCTTGTGGGCAGAAGCATGCAACACGGCAATCTATTAG

Fln Alignment:

AllPine_b_rep_c63861___IRLIHSDICGPMSTKALSGAEYFVTFIDDYSRKTWIYFLKTKDEVFCLFKEFKALVENLTGKKIKFLRSDNGGEYVNKDFTDFCAKEGIRREWIDTYNLEQNExxxxxxxIIVEAAWTMMYDPDMPKFLWAEACNTAIY
B8LKX7________________LHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGxxxxxxxTLMEMARCMLHARNMDPKFWAEAINTATY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain