SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene206205

Length: 445 nt

UniGene Fasta

>sp_v3.0_unigene206205
ATCCTCCTCTCCTATATATTTCTACTACTTTTCCTCCTCTTCATCGTACCTCAACCTTTCGTTTCGTTTGTCATAATTCGGACGTTACTCGCCATTTGCTTCAAGTCGCCCTCACGCCTTTTAGCTATTATGTTCATGCTTCCTCGTACCAACGAAAGATCATGAGCCAAGTTTGCAAGGCAGAAACTGCTTGCGCTGCCTGCAAATTCCAGAAAAAGAAATGCTCGGAGAAATGCGTGCTCGCGCCATATTTCCCGCAGAACGATCCAGACAAGTTCATGTTGGTGCACAGATTATTCGGAAATGGCCATGTCGTCAAACTACTACAGGATCTACCAGCCGAGCAGAGAGGTGATGCAGTCAGCAGCCTGGTGTACGAAGCAAAAGCCAGAGTTGCAGATCCTGTCCATGGCTGTGTAGCACTAATCAATGACCTCCACAAGAA

Ace file of the UniGene sp_v3.0_unigene206205

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LOB domain protein 1, putative n=1 Tax=Solanum demissum RepID=Q6L463_SOLDE	-	-	1.0e-19	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Ramosa 2	-	-	1.12e-13	-

Source	Gene names
Sma3	AS2; ASL1; ASL13; ASL14; ASL2; ASL3; ASL4; ASL5; ASL6; ASL7; ASL8; ASL9; B1164G01.6; CRLL3; CRLL4; GSVIVT00009328001; GSVIVT00009702001; GSVIVT00009703001; GSVIVT00009704001; GSVIVT00016010001; GSVIVT00018249001; GSVIVT00018256001; GSVIVT00018258001; GSVI

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monolayer-surrounded lipid storage body outer lipid monolayer	GO:0034430	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	specification of symmetry	GO:0009799	Biological Process	-
Sma3	polarity specification of adaxial/abaxial axis	GO:0009944	Biological Process	-
Sma3	proximal/distal pattern formation	GO:0009954	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	organ boundary specification between lateral organs and the meristem	GO:0010199	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	petal development	GO:0048441	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oleosin	IPR000136	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Lateral organ boundaries, LOB	IPR004883	-	-
Sma3	Asymmetric leaves, AS2/LOB	IPR017414	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G31320.1	LBD4 LOB domain-containing protein 4 chr1:11213107-11214032 FORWARD LENGTH=172	1.0e-24	58%
RefSeq	Arabidopsis thaliana	NP_174417.1	LOB domain-containing protein 4 [Arabidopsis thaliana]	1.0e-24	58%
RefSeq	Populus trichocarpa	XP_002312035.1	predicted protein, partial [Populus trichocarpa]	2.0e-25	58%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQI9

Fln msg: Distance to subject end: 65 aas, your sequence is shorter than subject: 94 - 167

Fln protein: MSQVCKAETACAACKFQKKKCSEKCVLAPYFPQNDPDKFMLVHRLFGNGHVVKLLQDLPAEQRGDAVSSLVYEAKARVADPVHGCVALINDLHK

Protein Length: 95

Fln nts: ATCCTCCTCTCCTATATATTTCTACTACTTTTCCTCCTCTTCATCGTACCTCAACCTTTCGTTTCGTTTGTCATAATTCGGACGTTACTCGCCATTTGCTTCAAGTCGCCCTCACGCCTTTTAGCTATTATGTTCATGCTTCCTCGTACCAACGAAAGATC_-_ATGAGCCAAGTTTGCAAGGCAGAAACTGCTTGCGCTGCCTGCAAATTCCAGAAAAAGAAATGCTCGGAGAAATGCGTGCTCGCGCCATATTTCCCGCAGAACGATCCAGACAAGTTCATGTTGGTGCACAGATTATTCGGAAATGGCCATGTCGTCAAACTACTACAGGATCTACCAGCCGAGCAGAGAGGTGATGCAGTCAGCAGCCTGGTGTACGAAGCAAAAGCCAGAGTTGCAGATCCTGTCCATGGCTGTGTAGCACTAATCAATGACCTCCACAAGAA

Fln Alignment:

AllPine_b_rep_c63850___SEKCVLAPYFPQNDPDKFMLVHRLFGNGHVVKLLQDLPAEQRGDAVSSLVYEAKARVADPVHGCVALINDL
B8LQI9________________SQNCVLAPYFPQGKPHKFLLVHKVFGNGHVVKLLQDLPAEQRGDAVSSMVYEASQRFRDPVHGCAGVINDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain