SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene206196

Length: 372 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene206196
ACTGTTGTGCAGGATCTAGAGCTGAGCCAGCTTCAAGGTGATCAAAGGAAGAACGTTTCTCAGTTCCTTATCAATGCTGGTTTGGTGAAGAAAAGATTCATGGATTTTAAACGACTTATTTGATGAAGACGTAGATCAGTAAAAAATGCATTAATGTGCTGTTTTTAGATTTCAAATTGTACTTTTGACAGTACATATGTACTGTTACTACTGTGTTGGTGATCACCTCATGTATAGGTGGCGGATAAATTATTTTCTTTGTTTTCTTAGGGATTTTAGGGATTTTAACGTTGTAAGGAATGTTCTCTCCTGAGTCAAATCGGGTATCATATGTTGTCTGTAAACCTCTGTACTCTTCCAATTATAAATACC

Ace file of the UniGene sp_v3.0_unigene206196 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%

Source	GOs	Term	Type	e value	Identity
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	0.0	-
Sma3	translational initiation	GO:0006413	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation initiation factor SUI1	IPR001950	-	0.0	-
Sma3	Eukaryotic translation initiation factor SUI1	IPR005874	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTS5

Fln msg: your sequence is shorter than subject: 41 - 112

Fln protein: TVVQDLELSQLQGDQRKNVSQFLINAGLVKKRFMDFKRLI*

Protein Length: 42

Fln nts: ACTGTTGTGCAGGATCTAGAGCTGAGCCAGCTTCAAGGTGATCAAAGGAAGAACGTTTCTCAGTTCCTTATCAATGCTGGTTTGGTGAAGAAAAGATTCATGGATTTTAAACGACTTATTTGA___TGAAGACGTAGATCAGTAAAAAATGCATTAATGTGCTGTTTTTAGATTTCAAATTGTACTTTTGACAGTACATATGTACTGTTACTACTGTGTTGGTGATCACCTCATGTATAGGTGGCGGATAAATTATTTTCTTTGTTTTCTTAGGGATTTTAGGGATTTTAACGTTGTAAGGAATGTTCTCTCCTGAGTCAAATCGGGTATCATATGTTGTCTGTAAACCTCTGTACTCTTCCAATTATAAATACC

Fln Alignment:

AllPine_b_rep_c63835___TVVQDLELSQ---LQGDQRKNVSQFLINAGLVKK
A9NTS5________________TVVQDLELGQIIQLQGDQRKNVSQFLINAGLVKK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain