SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene206000

Length: 435 nt

UniGene Fasta

>sp_v3.0_unigene206000
ACCCCCCGGCCTTTGGATTTCATGGGTTCATTTCACTGACTCCCGCCGTGAAATATCACTAATTTCGCTTCAGAGTTTCTGCAATATTGCCAAATATGGAGAATTTTCCCCAGCAGGAACCTGACAATGCCATTGCTTTACCACACGAAGATCCCGGTTCCCGCCAATTTAAGGGAATCCGACTGCGCAAATGGGTGAGCTGGGTATCTGAAATCCGGATGCCCAGATCCAGAAAGAAGATATGGCTTGGCTCATACACTACCCCGGAGCAGGCTGCCCGCGCTTACGACGCCGCAATGTATTGTCTGAGAGGGCGCAATGCCGAATTCAACTTTTCTGTCCCCGACATTCCGACTCCGTCCCCCCTTTCCCGTGAGCAAATTCAGCATGCCGCCGCCGAATATGCGTTGAGCCAGACCCCTTCGAGTTTGGCCT

Ace file of the UniGene sp_v3.0_unigene206000

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dehydration-responsive element binding protein 3 n=1 Tax=Glycine max RepID=Q2VEU3_SOYBN	-	-	8.0e-25	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	AP2/ERF domain-containing transcription factor	-	-	3.667e-27	-

Source	Gene names
Sma3	AP22.2; At1g19210; At1g33760; At1g74930; At2g23340; At3g50260; At4g06746; At4g36900; At5g21960; C-EF8; C7A10.460; DREB; DREB2; DREB33; DREB34; DREB37; DREB38; DREB39; DREB40; DREB41; DREB44; DREB45; DREB46; DREB47; DREB52; DREB53; DREB57; ERF007; ERF008;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G19210.1	Integrase-type DNA-binding superfamily protein chr1:6626973-6627530 REVERSE LENGTH=185	2.0e-29	58%
RefSeq	Arabidopsis thaliana	NP_173355.3	ethylene-responsive transcription factor ERF017 [Arabidopsis thaliana]	2.0e-29	58%
RefSeq	Populus trichocarpa	XP_002308508.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	5.0e-29	55%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMR5

Fln msg: Distance to subject end: 103 aas, your sequence is shorter than subject: 113 - 216

Fln protein: MENFPQQEPDNAIALPHEDPGSRQFKGIRLRKWVSWVSEIRMPRSRKKIWLGSYTTPEQAARAYDAAMYCLRGRNAEFNFSVPDIPTPSPLSREQIQHAAAEYALSQTPSSLA

Protein Length: 114

Fln nts: ACCCCCCGGCCTTTGGATTTCATGGGTTCATTTCACTGACTCCCGCCGTGAAATATCACTAATTTCGCTTCAGAGTTTCTGCAATATTGCCAAAT_-_ATGGAGAATTTTCCCCAGCAGGAACCTGACAATGCCATTGCTTTACCACACGAAGATCCCGGTTCCCGCCAATTTAAGGGAATCCGACTGCGCAAATGGGTGAGCTGGGTATCTGAAATCCGGATGCCCAGATCCAGAAAGAAGATATGGCTTGGCTCATACACTACCCCGGAGCAGGCTGCCCGCGCTTACGACGCCGCAATGTATTGTCTGAGAGGGCGCAATGCCGAATTCAACTTTTCTGTCCCCGACATTCCGACTCCGTCCCCCCTTTCCCGTGAGCAAATTCAGCATGCCGCCGCCGAATATGCGTTGAGCCAGACCCCTTCGAGTTTGGCCT

Fln Alignment:

AllPine_b_rep_c63306___MENFPQQEPDNAIALPHEDPGSRQFKGIRLRKWVSWVSEIRMPRSRKKIWLGSYTTPEQAARAYDAAMYCLRGRNAEFNFSVPDIPTPSPLSREQIQHAAAEYALSQTPSSL
B8LMR5________________MENSREQEHDHAIALPHEDRGSYQFKGIRLRNWGSWVSEIRIPRTREKLWLGSYTTPEQAARAFDAALYCLRGPNAKFNFSVPDIPSASSLSRRQIQHAAVEYALGQPPSSL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
111		66	33		0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain