SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene205874

Length: 412 nt

UniGene Fasta

>sp_v3.0_unigene205874
CACCATTGAGGACAGAAATGCCATCATCCTCCTCTCTCGCTCTCTCAGCTTCCTATGTACAGTACCATTTTCTTAGATTTTTGATATAGGAAACATGGCTAACTACGTACAGTTTTTGGTCGGCATTCTAGGAAACGCAGCTTCGTTGCTGCTTTATGGAGCCCCAATCATTACGTTTAGGAGAGTGATTAAGAAACGATCGACAGAGGATTTCTCAGGCTTCCCCTATGCAATAGCTTTGCTAAATTGTCTCCTTTACACATGGTATGGGTCACCCCTGATCAGTAATGGCTTCGAAAATGTCTTGGTATTGACTGTCAATGGCGTTGGAATCATTCTCGAGCTTCTTTTTGTTACTACATATCTGAAATTCGCTCCACGACAATCCAAGTTAGCAATGGTGACAATACTC

Ace file of the UniGene sp_v3.0_unigene205874

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MtN3 protein-like [Arabidopsis thaliana]	-	-	1.0e-26	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%

Source	Gene names
Sma3	At5g53190; GSVIVT00006498001; Os01g0220700; OsI_00934; OsJ_00913; P0483F08.29; POPTRDRAFT_1118307; POPTRDRAFT_891394; RCOM_1580410;

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	RAG1-activating protein-1-related	IPR004316	-	-
Sma3		IPR018169	-	-
Sma3		IPR018179	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G53190.1	SWEET3, AtSWEET3 Nodulin MtN3 family protein chr5:21572417-21574284 REVERSE LENGTH=263	7.0e-34	54%
RefSeq	Arabidopsis thaliana	NP_200131.2	Nodulin MtN3 family protein [Arabidopsis thaliana]	1.0e-33	54%
RefSeq	Populus trichocarpa	XP_002331839.1	predicted protein [Populus trichocarpa]	7.0e-34	54%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZG1

Fln msg: Distance to subject end: 165 aas, your sequence is shorter than subject: 106 - 272

Fln protein: MANYVQFLVGILGNAASLLLYGAPIITFRRVIKKRSTEDFSGFPYAIALLNCLLYTWYGSPLISNGFENVLVLTVNGVGIILELLFVTTYLKFAPRQSKLAMVTIL

Protein Length: 107

Fln nts: CACCATTGAGGACAGAAATGCCATCATCCTCCTCTCTCGCTCTCTCAGCTTCCTATGTACAGTACCATTTTCTTAGATTTTTGATATAGGAAAC_-_ATGGCTAACTACGTACAGTTTTTGGTCGGCATTCTAGGAAACGCAGCTTCGTTGCTGCTTTATGGAGCCCCAATCATTACGTTTAGGAGAGTGATTAAGAAACGATCGACAGAGGATTTCTCAGGCTTCCCCTATGCAATAGCTTTGCTAAATTGTCTCCTTTACACATGGTATGGGTCACCCCTGATCAGTAATGGCTTCGAAAATGTCTTGGTATTGACTGTCAATGGCGTTGGAATCATTCTCGAGCTTCTTTTTGTTACTACATATCTGAAATTCGCTCCACGACAATCCAAGTTAGCAATGGTGACAATACTC

Fln Alignment:

AllPine_b_rep_c62699___NYVQFLVGILGNAASLLLYGAPIITFRRVIKKRSTEDFSGFPYAIALLNCLLYTWYGSPLISNGFENVLVLTVNGVGIILELLFVTTYLKFAPRQSK
A9NZG1________________DHIRLAVGIIGNITSLLLYGAPVLTFMKVIKEKSVGQYSCTPYLIALFNCLIYTWYGFPVVSNGWENFLVSTVNGVGIVPECFAICTYIVYAPPKFK

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
118		20		80	0.995505
149	25		75		0.996473
152	25		75		0.996473
155			25	75	0.996473
158		25		75	0.996473
171	75		25		0.996473
176			80	20	0.995499
198		80	20		0.995494
209	20		80		0.995494
240		33		66	0.997452
272		33	66		0.997476
278		66		33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain