SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene205836

Length: 436 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene205836
CTGTCTTGACATCCTGAAGGAGCAGTGGAGTCCTGCCTTGACAGTTTCCAAAGTGCTATTATCAATTTGCTCTCTTCTGACTGATCCTAACCCTGATGATCCTCTGTCCCTGAAATTGCACATATTTACAAGAGTCAAAGAGCTCGTTATGAGGAGACAGCAAGAGCTTGGACTCAAAAATATGCCATGAACTGAATGGTCTTTAATAATTACTATTTCAGTCATTTAGACTATAGATTATGGTAGGAGAGCTAGGACAGGAGAAAAGGCACGTTATTTTCTCTAGCATACTCTAATATTCTTGAAGTTTGCAGTACATTAAAAGTATGGTTTTCTGTGTTTAAGAGAATGGGATCTATGTTGATACCTATGTTGCATAGCAATAATACTCTGTTTAACTTCAAGTTTAATTTCTTGCATCATTACATATGAACAG

Ace file of the UniGene sp_v3.0_unigene205836 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Arachis hypogaea RepID=Q5UAG0_ARAHY	-	-	4.0e-23	100%
FL-Next	tr=Putative ubiquitin conjugating enzyme; Pinus resinosa (Red pine) (Norway pine).	-	-	0.0	86%
Sma3	Ubiquitin carrier protein	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		0.0	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		0.0	%
Sma3	Ubiquitin--protein ligase.	EC:6.3.2.19	-	1.524e-13	-

Source	Gene names
Sma3	At1g16890; At1g64230; At1g78870; At2g16740; At3g08690; At3g08700; At4g27960; At5g41700; At5g53300; At5g56150; B0811B10.8; B1043F11.37; CHLREDRAFT_152525; CHLREDRAFT_160028; Elr; F17F16.19; F17O14.16; F17O14.17; F22C12.2; F6I1.11; F9K20.8; GSVIVT0000246900

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	UBC13-MMS2 complex	GO:0031372	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	small conjugating protein ligase activity	GO:0019787	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	post-translational protein modification	GO:0043687	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-
Sma3	regulation of protein metabolic process	GO:0051246	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 3	IPR006402	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G64230.4	UBC28 ubiquitin-conjugating enzyme 28 chr1:23833792-23835220 FORWARD LENGTH=190	2.0e-24	97%
RefSeq	Arabidopsis thaliana	NP_001154446.1	ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]	2.0e-24	97%
RefSeq	Populus trichocarpa	XP_002330576.1	predicted protein [Populus trichocarpa]	1.0e-24	97%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9ZTZ8

Fln msg: Overlapping hits, possible frame ERROR between 127 and 106, your sequence is shorter than subject: 65 - 148

Fln protein: CLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPxxxxxxxxxKSQRARYEETARAWTQKYAMN*

Protein Length: 66

Fln nts: CTGTCTTGACATCCTGAAGGAGCAGTGGAGTCCTGCCTTGACAGTTTCCAAAGTGCTATTATCAATTTGCTCTCTTCTGACTGATCCTAACCCTGATGATCCTxxxxxxxxxxxxxxxxxxxxxxxxxxxAAGAGTCAAAGAGCTCGTTATGAGGAGACAGCAAGAGCTTGGACTCAAAAATATGCCATGAACTGAATGGTCTTTAATAATTACTATTTCAGTCATTTAGACTATAGATTATGGTAGGAGAGCTAGGACAGGAGAAAAGGCACGTTATTTTCTCTAGCATACTCTAATATTCTTGAAGTTTGCAGTACATTAAAAGTATGGTTTTCTGTGTTTAAGAGAATGGGATCTATGTTGATACCTATGTTGCATAGCAATAATACTCTGTTTAACTTCAAGTTTAATTTCTTGCATCATTACATATGAACAG

Fln Alignment:

AllPine_b_rep_c62400___CLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLxxxxxxxxKSQRARYEETARAWTQKYAMN
Q9ZTZ8________________CLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLxxxxxxxxKSQRARYEETARAWTQKYAMN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain