SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene205806

Length: 714 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene205806 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nascent polypeptide-associated complex subunit alpha-like protein n=2 Tax=Pinaceae RepID=NACA_PINTA	-	-	4.0e-11	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	Nascent polypeptide associated complex alpha subunit, putative	-	-	7.939e-13	-

Source	Gene names
Sma3	At3g12390; At3g49470; At4g10480; At5g13850; B1150F11.9; CHLREDRAFT_122124; F7L13.60; GSVIVT00008918001; GSVIVT00023323001; GSVIVT00037160001; LOC_Os03g02960; MAC12.19; MICPUCDRAFT_50137; MICPUN_58859; MICPUN_94750; MtrDRAFT_AC149050g19v1; NbNACa1; OJ1005_

Source	GOs	Term	Type	Identity
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Nascent polypeptide-associated complex NAC	IPR002715	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Nascent polypeptide-associated complex, alpha subunit	IPR016641	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G12390.1	Nascent polypeptide-associated complex (NAC), alpha subunit family protein chr3:3942344-3943595 FORWARD LENGTH=203	3.0e-13	89%
RefSeq	Arabidopsis thaliana	NP_187845.1	Nascent polypeptide-associated complex subunit alpha-like protein 1 [Arabidopsis thaliana]	4.0e-13	89%
RefSeq	Populus trichocarpa	XP_002303961.1	predicted protein, partial [Populus trichocarpa]	6.0e-15	92%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
38	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain